This warning
* checking dependencies in R code ... WARNING
'::' or ':::' import not declared from: ‘BSgenome.Athaliana.TAIR.TAIR9’
means that you have used BSgenome.Athaliana.TAIR.TAIR9 in your code, but you
have not declared it in your DESCRIPTION file, either as Imports: or Suggests:.
Since it isn't in your DESCRIPTION file, the build system does not know that it
should be installed for checking your package.
~/b/git/trena master$ grep Athal DESCRIPTION
~/b/git/trena master$
This is a little surprising, implying that no other package in the build system
has this package in the DESCRIPTION file, but...
It looks like this needs to be added to the Imports: field, or perhaps Suggests:
Martin
On 10/12/20, 12:36 PM, "Bioc-devel on behalf of Paul Shannon"
<bioc-devel-boun...@r-project.org on behalf of paul.thurmond.shan...@gmail.com>
wrote:
My package trena fails on all platforms with this error:
there is no package called ‘BSgenome.Athaliana.TAIR.TAIR9’
Is Arabidopsis no longer supported by bioc? I remember some discussion
related to this over the summer.
- Paul
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