We do not see any changes in the version on Bioconductor git.bioconductor.org. You need to push the changes to that location not your github location and there needs to be a valid version bump for the changes to propagate.
Firstly, please check your remotes git remote -v upstream should point to git.bioconductor.org upstream g...@git.bioconductor.org:packages/DegNorm The instructions you sent that you followed were for maintaining a Bioconductor-only repository for an existing package. This would be if you did not have a github repository of your own or only wanted to use the git.bioconductor.org version. If this is not the case please refer to https://bioconductor.org/developers/how-to/git/sync-existing-repositories/ These instructions would allow you to keep pointers to both a personal github and the bioconductor official repository. make sure there are no errors when you git pull upstream master and/or no errors when trying to push changes up: git push upstream master If there are and it says something about public keys: Did you follow the instructions for initilizing your git credentials when the package was accepted https://github.com/Bioconductor/Contributions/issues/1491#issuecomment-637138209 Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Jiping Wang <jzw...@northwestern.edu> Sent: Tuesday, September 22, 2020 8:48 AM To: Shepherd, Lori <lori.sheph...@roswellpark.org> Cc: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] Bioconductor package DegNorm Hi Lori, I have made changes to some of the R functions a few months ago, also I have changed version etc (recently fixed a few bugs). But I noticed in the current Bioconductor version, such changed have never been included. Could you advise what happened? Or anything additional should I do? I believed I followed steps in the following. Thanks. jiping https://secure-web.cisco.com/1C78sfLYvvhE9fnuPonlmLQohdaSv4_KuRnc8mKA4EZauqXZ2sarLLn6Nq2bwi5YanH8qClEyO0YZ6R7js8DLFny1IDlHiFhN6o0QuIxKYYeEb5Gn0od_wEtSKembRmYmefR-zKOWccVhCpfMCjluJRLSNz5DYwMG1fIr06DCG0yjsRFcj5wcNNMRTrN9pMAxsY18Bh-182Qe52J2vgS5HITGNAlqIr2VPj2TkidmkclTH5ByuO68nNfG4tH5WjqfjFa5I6hp6Ex7Pca_rKjjBKZdYjyEX86zW0qacVHr8OhHilbCFNMqciPumMPQqfyDvM-n7aOMexDEWhIIkJJCSQ/https%3A%2F%2Fbioconductor.org%2Fdevelopers%2Fhow-to%2Fgit%2Fmaintain-bioc-only%2F On 9/2/20, 12:29 PM, "Bioc-devel on behalf of Jiping Wang" <bioc-devel-boun...@r-project.org on behalf of jzw...@northwestern.edu> wrote: Hi Lori, I hope I have fixed all bugs. I have pushed all changed to github. Thanks for help. Best, jiping From: "Shepherd, Lori" <lori.sheph...@roswellpark.org> Date: Wednesday, September 2, 2020 at 9:40 AM To: jiping/wang User <jzw...@northwestern.edu> Subject: Bioconductor package DegNorm Hello Package Maintainer, The Bioconductor Team would like to notify you that your package is currently failing on the devel 3.12 version of Bioconductor, and has been for an extended period of time. Please fix your package to R CMD build and R CMD check cleanly immediately to avoid deprecation of your package. While devel is a place to experiment with new features, we expect packages to build and check cleanly in a reasonable time period and not stay broken for any extended period of time. If you are having trouble or have any further questions please do not hesitate to reach out to the developers mailing list at bioc-devel@r-project.org We appreciate your attention to this matter. The package has been failing since 06/29/20 Cheers https://secure-web.cisco.com/1Gu6p5E755WRiodhYC0LQ1Wj0EDIL2NGK6Iv20B_ZZkDNzRm670rMz9xHbEYGCVLuVUHHYj26wP8fuBf8BPjwfLfvOIY72aowjnoYc_IfFUcp8F7GccSbJ5S-0bnKw9SIV8q_1hQFzA_GRFtPFRPOddJSL0yAUWDu6B6uPYsvolsgei4cbq1myEH5fLoNrvrjeLrr9ByKsT3k69VStgs5IJLF7QLGgP8wk36a2SXGFzvNq-_1DaQzubh0P8u3jNPiGQkpSR3h_DR8Q8TBLpiEgrBVLOmqF-fEZOOPPCrsDeEJR0dokBTtwu6Go_JvKB1Po9My4GLqxMjNJgy1zYGsjA/https%3A%2F%2Furldefense.com%2Fv3%2F__http%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2FDegNorm__%3B%21%21Dq0X2DkFhyF93HkjWTBQKhk%21Fj9WnIAbw3NfGYpF-gcbNWKpL-EdvTmxq2BMLQVvyYgs3mA01UtyJ84W8D1TNLHHTmtBAA%24 Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. 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If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
