Sorry, looks like the error got mangled. I pasted it in this gist: https://gist.github.com/alinaselega/f5c4f724309211cc4a5bedd2a05bfd1e
Thanks, Alina On Sun, 6 Sep 2020 at 12:36, Alina Selega <alina.sel...@gmail.com> wrote: > Hi, > > I wanted to re-add a license file to my repository which got misplaced (no > changes to code). I followed the instructions in this link ( > https://bioconductor.org/developers/how-to/git/pull-upstream-changes/) to > pull upstream changes. > > I then followed these instructions ( > https://bioconductor.org/developers/how-to/git/push-to-github-bioc/). I > successfully pushed the file to my Github repo, but when I reached step 6 > to push the changes to Bioconductor, I got the following errors: > > ``` > Counting objects: 3, done. > Delta compression using up to 8 > threads. > Compressing objects: 100% (3/3), done. > Writing objects: 100% (3/3), 12.11 KiB | 6.05 > MiB/s, done. Total 3 (delta 1), reused 1 > (delta 0) > remote: fatal: this operation must be run in a work tree > remote: ERROR:root:Exception: Command '['git', > 'rev-parse', '--show-toplevel']' returned non-zero exit status 128 > remote: ERROR:root:local variable 'package_name' referenced before > assignment > remote: Note: failed to update RSS feed;git repository updated > successfully. To git.bioconductor.org:packages/BUMHMM.git > bbafa73..160b7a7 master -> master > ``` > > It appears that the upstream updated successfully but can you advise about > the errors? > > Thank you, > Alina > > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
