Dear Bioconductor team, I am trying to update a package we developed, HiCcompare. https://bioconductor.org/packages/HiCcompare/. The package has been successfully submitted previously. However, now `R CMD check` throws an error: E> Quitting from lines 426-427 (HiCcompare-vignette.Rmd) E> Error: processing vignette 'HiCcompare-vignette.Rmd' failed with diagnostics: E> non-conformable arrays E> --- failed re-building ‘HiCcompare-vignette.Rmd’
Yet, If I knit the vignette manually, it builds. If I execute the code manually, it works. If I install the package from Bioconductor, it also works. I'm working with this package using bioconductor/bioconductor_docker:devel. But the strange behavior - vignette knits manually but fails in CMD check - persists both in Docker container and on local R installation. Please advise, where to troubleshoot next. Thanks, Mikhail --- Mikhail Dozmorov, Ph.D., Blick scholar Associate Professor, Department of Biostatistics Affiliate, Department of Pathology Virginia Commonwealth University OCS #738, 830 E. Main St, RVA, 23298 E-mail: mikhail.dozmo...@vcuhealth.org Phone: 804-827-2055 https://medschool.vcu.edu/expertise/detail.html?id=mdozmorov [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
