I can reproduce the error, which arises from iheatmapr. Note that http://bioconductor.org/checkResults/devel/bioc-LATEST/malbec1-R-instpkgs.html
shows that iheatmapr is 0.4.12 and on my system example(iheatmap) fails with the error you showed. In future please provide sessionInfo() result when reporting a problem. on my system, example(iheatmap) dies in an unexported function main_heatmap. iheatmapr is an ropensci package that depends on S4Vectors. it may only be tested with the release version. You can see at https://travis-ci.org/github/ropensci/iheatmapr/jobs/698340792 that iheatmapr is passing its tests. i don't know how to determine what packages were used in the tests. you might want to condition out your example for now. perhaps you can debug iheatmapr against current S4Vectors and suggest the solution to iheatmapr authors On Wed, Jun 17, 2020 at 1:26 AM Ahmed Mohamed <moha...@kuicr.kyoto-u.ac.jp> wrote: > Hi all, > > My package "lipidr" has been failing checks for a while, giving the error > below: > > Error in .wrap_in_length_one_list_like_object(value, name, x) : > failed to coerce 'list(value)' to a IheatmapPlots object of length 1 > > (Full report here: > > http://bioconductor.org/checkResults/devel/bioc-LATEST/lipidr/malbec1-checksrc.html > ) > > The error seems to originate from S4Vectors package, which lipidr depends > on (indirectly through SummarizedExperiment). However, I am completely > unable to reproduce this error. This is what I did: > - Installed Bioc-devel docker image > - run the faulty example alone, as well as devtools::check(), both without > errors. > - Ran BiocManager::install(update = TRUE) to pick up updates not propagated > to the docker image > - I even installed S4Vector from GitHub, just in case the git checkout is > ahead of Bioc. > > Faulty example: > https://github.com/ahmohamed/lipidr/blob/master/R/plot.R#L345 > > Any suggestions would be appreciated. > Thanks. > Ahmed. > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- The information in this e-mail is intended only for the ...{{dropped:18}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
