It will not be tested before integration. We assume that all maintainers and R CMD build and R CMD check before submitting changes to Bioconductor.
You will need to have activated your git credentials account https://git.bioconductor.org/BiocCredentials/login/?next=/BiocCredentials/ And follow the instructions for pushing to git.bioconductor.org. We provide many help instruction files for different scenarios http://bioconductor.org/developers/how-to/git/ You will most notably be interested in Syncing to Bioconductor http://bioconductor.org/developers/how-to/git/sync-existing-repositories/ and pushing fixes to release and devel http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/ Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: stefano <mangiolastef...@gmail.com> Sent: Wednesday, June 3, 2020 4:29 AM To: Shepherd, Lori <lori.sheph...@roswellpark.org>; bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: Re: Bioconductor package tidybulk Hello Again, I would be happy to submit the github master with the patch tonight if you could please confirm the commit command. Will it be tested before integration I assume. Thanks a lot! Best wishes. Stefano Stefano Mangiola | Postdoctoral fellow Papenfuss Laboratory The Walter Eliza Hall Institute of Medical Research +61 (0)466452544 Il giorno mer 3 giu 2020 alle ore 12:26 stefano <mangiolastef...@gmail.com<mailto:mangiolastef...@gmail.com>> ha scritto: Thanks Lori, (it seems outlook lost my sent email) sorry I missed this. It's so strange, few days ago I checked at https://www.bioconductor.org/packages/devel/bioc/html/tidybulk.html<https://secure-web.cisco.com/1ymalO2Wo2gRPT4USwKYJChnovSH3sx87LQTVbhEAL5rIc3rN6fxBVq0xvtPe8K_Q-R_eFRNkhIlQj7WO0ojRaWF_pEyWlhdIOd2PMRLmE2OPNqgY5f94zo8UYWUGdcvlZcVx8reWZ3HqP5ZigV5z6s1O1vpAhOg7Ilz6E1U3-x5Ew-CEeVKmnYZe96PicWrzG2pfFGcttYa35E5pwKrrGI-dm5Sy6FKZhrPJtO-Qm65EpKlgjJg-S1H0Dng6El9eZl79ifySj3rIrEtYwcVvsRCgOGmn5RqrxF4_1vKVJl7MF59rIRIHqt-OR9BXO6Ol7hNnQze5_Kl_SbkOEyd9h_FG7hn_MIzYBsitEyDD5-8/https%3A%2F%2Fwww.bioconductor.org%2Fpackages%2Fdevel%2Fbioc%2Fhtml%2Ftidybulk.html> and the build was OK for devel and stable versions. I have done the fix commit d1fe5beb290765181e0ce377b890f453c62ea9da Should I (?) - integrate the commit to the tidybulk version present in Bioconductor, and push - or push the update github repo Could you point me to the resource tat states how to push to Bioconductor, so I'm sure I am doing the right thing. Thanks alot. Best wishes. Stefano Stefano Mangiola | Postdoctoral fellow Papenfuss Laboratory The Walter Eliza Hall Institute of Medical Research +61 (0)466452544 Il giorno mer 3 giu 2020 alle ore 07:10 Shepherd, Lori <lori.sheph...@roswellpark.org<mailto:lori.sheph...@roswellpark.org>> ha scritto: Hello Package Maintainer, The Bioconductor Team would like to notify you that your package is currently failing on release and devel versions of Bioconductor and has been for an extended period of time. This is very problematic. Please fix your package to R CMD build and R CMD check cleanly immediately to avoid deprecation of your package. If you are having trouble or have any further questions please reach out to the developers mailing list at bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> We appreciate your immediate attention to this matter. Cheers http://bioconductor.org/checkResults/devel/bioc-LATEST/tidybulk<http://secure-web.cisco.com/1V0Xuq_KL0x1Cl4QqzHrj1dnBRaQhCCuV-22PXesIk07DaPPjoJ3QsrSPROh_5cXbYpawIN5i2Nq1BZR_hLHXPuM6pjQ-3eMVQGnIfUDaGyUaM2r0OKlVcRHQal8uBYNnIvQH6S2oehrbakBF8VT50ga-chmesQYDXRVuPo_IWNS6IIR3LBhvBnY1hv5_raI9CsjS9fUpU-G09_CAyRyUA17JrLjrtMAT4Bxi5T0NN53kKg2ZP4Unsqwtr5Oix4WaXxRCKrMa0s77HeePZYvUAYnkfUYZCiYXuVsqmRytlG92KumBHz-0P1es_zBp5JVmqn-Y3mjMBOwl7Vy8Lx1o8anxo8xN9qChrHFrl14SjZQ/http%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2Ftidybulk> http://bioconductor.org/checkResults/release/bioc-LATEST/tidybulk<http://secure-web.cisco.com/1gjLzb1cWpFF_sHsM57h5yIYvuiIuFDLZmakncmleiFa_KJWoTiDpmLs9wxxenQRe9bjnc5MCunwT6ishis6WIailFEBNiwNXyJWEXo9_I4MXs7HnnVHP8L-aUJI9D52getJRFvo3Y1oau4z0D0sMu_33XBgwAkFIcpDb8aleVdkalFB6T0bdquwBcfn_pO0zBXW8UgXsoFB3_RvbY4sgsDnymfSGqVXlwELCaQ9euMvV9waafBekDjsrAOD5H7L_t2wd91GpDyI8LNZhIFPO1vmUtCO5BkFrYxJvEEoLmqNSftO5yyQ2UqMuB8OQeacnKOLGwd0V-6_USxeGmvqSxVi2BDpIV7ukHTLkFTScrn4/http%3A%2F%2Fbioconductor.org%2FcheckResults%2Frelease%2Fbioc-LATEST%2Ftidybulk> Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
