Hi Lori, Thanks for you message.
I am working on this now. I believe I have resolved the issue and pushed the updated package that appears to build and check locally to both the release and devel versions of bioconductor with appropriately updated version numbers. I will check to see how build goes when these pushes are accepted tomorrow. Please do not deprecate our package. I will work on this until the issue is resolved. Many thanks, David On Jun 2, 2020, at 2:39 PM, Shepherd, Lori <lori.sheph...@roswellpark.org<mailto:lori.sheph...@roswellpark.org>> wrote: Hello Package Maintainer, The Bioconductor Team has reached out multiple times regarding your package. Your package is currently failing on both release and devel versions of Bioconductor, and has been for an extended period of time. If your package is not fixed to R CMD build and R CMD check cleanly by the end of the week your package will be deprecated. Links to the failing build reports can be found below. If you are having trouble or have any further questions please reach out to the developers mailing list at bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> We appreciate your immediate attention to this matter. Cheers http://bioconductor.org/checkResults/devel/bioc-LATEST/BEARscc<https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_devel_bioc-2DLATEST_BEARscc&d=DwMFAg&c=WO-RGvefibhHBZq3fL85hQ&r=ItMNXlBDD-RgmW8ecHzlECLtXrCIQo-GHHHdA_G8NOY&m=evr6GucLL6qbFQ_9j2Kv0c1TbaYI8PA6nUgp-75guGs&s=d4sB5BVfd5jpolTtL5BGLeXB0foeajj5QvSfS3VNTfo&e=>/ http://bioconductor.org/checkResults/release/bioc-LATEST/BEARscc<https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_release_bioc-2DLATEST_BEARscc&d=DwMFAg&c=WO-RGvefibhHBZq3fL85hQ&r=ItMNXlBDD-RgmW8ecHzlECLtXrCIQo-GHHHdA_G8NOY&m=evr6GucLL6qbFQ_9j2Kv0c1TbaYI8PA6nUgp-75guGs&s=GLsqbpl_dw8WrOLkIjXSxA99s6tUVAQGhhqedy2PHck&e=>/ Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Shepherd, Lori <lori.sheph...@roswellpark.org<mailto:lori.sheph...@roswellpark.org>> Sent: Monday, March 16, 2020 8:56 AM To: david_sever...@hms.harvard.edu<mailto:david_sever...@hms.harvard.edu> <david_sever...@hms.harvard.edu<mailto:david_sever...@hms.harvard.edu>> Subject: Re: Bioconductor package BEARscc Please be aware your package is still failing. This is very problematic. The next Bioconductor release is scheduled for Tuesday April 28th. We appreciate your quick response in this matter. If your package remains broken we will begin the deprecation process to remove the package from Bioconductor. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Shepherd, Lori Sent: Wednesday, February 26, 2020 12:22 PM To: david_sever...@hms.harvard.edu<mailto:david_sever...@hms.harvard.edu> <david_sever...@hms.harvard.edu<mailto:david_sever...@hms.harvard.edu>> Subject: Bioconductor package BEARscc Dear Package Maintainer, We would like to bring to your attention that your package is failing to build/check on our devel build machines: http://bioconductor.org/checkResults/devel/bioc-LATEST/BEARscc Would you mind taking a look at this? Don't hesitate to ask on the bioc-devel mailing list if you have any question or need help. While the development branch is a place to develop new features and we expect packages to occasionally break, they should not remain broken for an extended period of time. If no action is taken over the next few weeks we will begin the deprecation process for your package. Thank you for your time and effort. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
