Thank you Charlotte, that was it! On Thu, 2020-05-07 at 11:39 +0200, Charlotte Soneson wrote:
Hi Waldir, try to delete the travis cache (under More Options - Caches) and restart the build. That helped for me. Best, Charlotte On 7 May 2020, at 11:33, Waldir Leoncio Netto <w.l.ne...@medisin.uio.no<mailto:w.l.ne...@medisin.uio.no>> wrote: Dear fellow developers, I have a package which has been failing on Travis CI's bioc-devel build since the release of R 4.0.0 and Bioconductor 3.11. The bioc-release build is still working fine. The error happens when installing the SummarizedExperiment dependency (or, apparently, when installing its dependency, GenomicRanges). Here is the relevant part of the log: * installing *source* package ‘SummarizedExperiment’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Error: package or namespace load failed for ‘GenomicRanges’: .onLoad failed in loadNamespace() for 'XVector', details: call: NULL error: (converted from warning) undefined slot classes in definition of "XRaw": elementMetadata(class "DataTable_OR_NULL") Error: package ‘GenomicRanges’ could not be loaded Execution halted ERROR: lazy loading failed for package ‘SummarizedExperiment’ * removing ‘/home/travis/R/Library/SummarizedExperiment’ * restoring previous ‘/home/travis/R/Library/SummarizedExperiment’ Error in i.p(...) : (converted from warning) installation of package ‘SummarizedExperiment’ had non-zero exit status Calls: <Anonymous> ... with_rprofile_user -> with_envvar -> force -> force -> i.p Execution halted travis_time:end:0be4d543:start=1588839621760310466,finish=1588839851948469642,duration=230188159176,event= [0K[31;1mThe command "Rscript -e 'deps <- remotes::dev_package_deps(dependencies = NA);remotes::install_deps(dependencies = TRUE);if (!all(deps$package %in% installed.packages())) { message("missing: ", paste(setdiff(deps$package, installed.packages()), collapse=", ")); q(status = 1, save = "no")}'" failed and exited with 1 during .[0m Your build has been stopped. I was wondering if anyone else went through this or can offer a solution. Best regards, Waldir [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
