Krutik, what's the link to your package submission issue on GitHub? I feel I would need a little more information on the package to give my opinion or advice. It is true that SummarizedExperiment and MultiAssayExperiment are designed primarily for experimental data rather than for differential expression output. But my first impression is that it will be important for you to directly support output from DESeq2, edgeR, and limma, since those are where most Bioconductor users get differential expression output from.
-- Levi Waldron Associate Professor Department of Epidemiology and Biostatistics CUNY Graduate School of Public Health and Health Policy Institute for Implementation Science in Population Health 55 W 125th St, New York NY 10035 https://waldronlab.io [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
