Thank you - sounds great. /Henrik On Tue, Dec 3, 2019 at 9:23 AM Pages, Herve <hpa...@fredhutch.org> wrote: > > Hi Henrik, > > On 12/3/19 09:13, Henrik Bengtsson wrote: > > I'm interested in finding out what customization Bioconductor servers > > do to R CMD check, e.g. _R_CHECK_***_ settings. I think someone > > pointed me to some location in the past, but I cannot locate it. > > The settings on the Linux/Mac builders are: > > https://github.com/Bioconductor/BBS/blob/master/3.11/R_env_vars.sh > > and on the Windows builder they are: > > https://github.com/Bioconductor/BBS/blob/master/3.11/R_env_vars.bat > > We just moved those settings to their own files yesterday (good timing) > to make it easier to re-use them for the devel docker image (see > https://github.com/Bioconductor/bioconductor_full/pull/20#issuecomment-560546981). > > > I > > think a natural place to document those would be on the 'Node Info' > > pages together with the existing platform and compiler information, > > e.g. > > https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_devel_bioc-2DLATEST_malbec2-2DNodeInfo.html&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=vTnT-DDbyP899v1VHljMc9jEcFqcbhXe6Dk3aTtU_YA&s=AFrilsJa2FP3Gk7trNjD2KuWa0WegOBq6ig8SHl0-sI&e= > > . > > Exactly. That's the plan. > > Cheers, > H. > > > > > Thanks, > > > > Henrik > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=vTnT-DDbyP899v1VHljMc9jEcFqcbhXe6Dk3aTtU_YA&s=Cc5slvLV6zlwGr9LwvWDwH44Dc5_zv-CoLF6Q83l9bE&e= > > > > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax: (206) 667-1319
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