Thanks this seems like a problem with large file size on Windows, probably in Rhtslib.
It might be better practice and more reliable to use BiocFileCache for downloads, e.g., url = "ftp://ftp.plantgenie.org/Tutorials/RnaSeqTutorial/data/star/unitTest/213.1_subset_sortmerna_trimmomatic_sorted.bam.bai"; BiocFileCache::bfcrpath(rnames = url) which downloads (once) and returns the path to the cached file. Martin On 11/25/19, 8:24 AM, "Bioc-devel on behalf of Nicolas Delhomme" <bioc-devel-boun...@r-project.org on behalf of nicolas.delho...@umu.se> wrote: Hej! The easyRNASeq package is not building on tokay1, with what seems to be a file decompression issue? https://master.bioconductor.org/checkResults/3.10/bioc-LATEST/easyRNASeq/tokay1-buildsrc.html It works fine on the other OSs. The error is triggered while downloading a small dataset during the vignette creation. I use `download.file` as the function to fetch the data, so it should be cross-platform compatible. I have no easy access to a windows machine, so I can’t easily reproduce the problem. Any insight into what could be the reason would be much appreciated :-) The easy solution would be to turn off the evaluation of that section of the vignette, but I’d rather not as it is a good test of the complete functionality of the package (something that would feel ill-fitted as a unit test). Thanks in advance, Nico _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
