Hi Lori, Is there a replacement for the athaliana package, org.At.tair.db? We sometimes use this in our work.
- Paul > On Nov 18, 2019, at 6:24 AM, Shepherd, Lori <lori.sheph...@roswellpark.org> > wrote: > > The Bioconductor Team is continuing to identify packages that will be > deprecated in the next release to allow for the Bioconductor community to > respond accordingly. The list will be updated monthly. The current list of > deprecated packages for Bioc 3.11 is as follows: > > Maintainer requested deprecation: > > * Software: > > * QUALIFIER > * motifRG > * triform > * Annotation: > > * org.At.tair.db > * hom.At.inp.db > * hom.Ce.inp.db > * hom.Dm.inp.db > * hom.Dr.inp.db > * hom.Hs.inp.db > * hom.Mm.inp.db > * hom.Rn.inp.db > * hom.Sc.inp.db > * KEGG.db (use KEGGREST instead) > > Unresponsive/not-maintained packages: > > * Software: > > * SELEX > * CTDquerier > > The follow Annotation packages were deprecated in 3.10 and removed from 3.11 > but not previously announced. > > * MafDb.ESP6500SI.V2.SSA137.hs37d5 > * MafDb.EXP6500SI.V2.SSA137.GRCh38 > > We will be sending emails out to packages that have been broken across all > platforms for an extended period of time as those are packages that are up > for immediate deprecation if not corrected in a timely fashion. > > Thank you > > > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
