Dear devel team,
My package "pwrEWAS" produced an error (see below) during checkResults in CHECK
on the windows server. I previously had an OK and did not change anything.
Should I just wait for the next build or how can I fix this issue?
Thanks,
Stefan
** running examples for arch 'x64' ... ERROR
Running examples in 'pwrEWAS-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pwrEWAS
> ### Title: pwrEWAS - A computationally efficient tool for comprehensive
> ### power estimation in EWAS
> ### Aliases: pwrEWAS
> ### Keywords: DNAm microarray power
>
> ### ** Examples
>
> outDelta <- pwrEWAS(minTotSampleSize = 10,
+ maxTotSampleSize = 20,
+ SampleSizeSteps = 10,
+ NcntPer = 0.5,
+ targetDelta = c(0.2, 0.5),
+ J = 1000,
+ targetDmCpGs = 10,
+ tissueType = "Adult (PBMC)",
+ detectionLimit = 0.01,
+ DMmethod = "limma",
+ FDRcritVal = 0.05,
+ core = 2,
+ sims = 30)
Using temporary cache
C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\RtmpIhL8JZ/BiocFileCache
Warning: download failed
web resource path:
'https://experimenthub.bioconductor.org/metadata/experimenthub.sqlite3'
local file path:
'C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\RtmpIhL8JZ/BiocFileCache/1e987801b42_experimenthub.sqlite3'
reason: Timeout was reached: [experimenthub.bioconductor.org] Connection
timed out after 10014 milliseconds
Warning: bfcadd() failed; resource removed
rid: BFC1
fpath: 'https://experimenthub.bioconductor.org/metadata/experimenthub.sqlite3'
reason: download failed
Error in .util_download(x, rid[i], proxy, config, "bfcadd()", ...) :
bfcadd() failed; see warnings()
Calls: pwrEWAS ... .create_cache -> .updateHubDB -> bfcadd -> bfcadd ->
.util_download
Execution halted
>From
>https://bioconductor.org/checkResults/3.10/bioc-LATEST/pwrEWAS/tokay1-checksrc.html
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