Hi Lori, Thank you for your help. I was able to reproduce the issue locally after updating the packages. I updated the vignette with the changes and pushed it on both RELEASE_3_9 and the development (3_10) branches. Again thank you for your help!
Regards, Ashish Jain On Tue, Sep 17, 2019 at 7:06 AM Shepherd, Lori < lori.sheph...@roswellpark.org> wrote: > I am able to reproduce the ERROR. It seems to be an issue of trying to > subset. > > > head(exp %>% gather(Tissue)) Tissue value > 1 Adipose Tissue 1.63226821549951 > 2 Adipose Tissue 0 > 3 Adipose Tissue 0 > 4 Adipose Tissue 0.485426827170242 > 5 Adipose Tissue 0.584962500721156 > 6 Adipose Tissue 3.05311133645956> head(exp %>% > gather(Tissue=1:(ncol(exp)-1)))Error: 1 components of `...` had unexpected > names. > > We detected these problematic arguments: > * `Tissue` > > Did you misspecify an argument?Call `rlang::last_error()` to see a backtrace > > > > > You can see if there were any recent changes to package you depend on that > could have caused this. A package you depend on may have changed their > functionality. I needed to update packages (with BiocManager::install() > update all ) in order to reproduce. > > Cheers, > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Cancer Institute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Ashish > Jain <j...@iastate.edu> > *Sent:* Monday, September 16, 2019 3:08 PM > *To:* bioc-devel@r-project.org <bioc-devel@r-project.org> > *Subject:* [Bioc-devel] Fwd: TissueEnrich problems reported in the > Multiple platform build/check report for BioC 3.9 > > Hi All, > > I just got the message that my package is giving an error during the build > process on Bioconductor build server. I saw the logs and found it is > failing while building the vignette. I am not sure why it's happening as I > have not updated the package since release and it was building without any > errors. Can someone look into this? > > Regards, > Ashish Jain > > ---------- Forwarded message --------- > From: <bbs-nore...@bioconductor.org> > Date: Mon, Sep 16, 2019 at 1:59 PM > Subject: TissueEnrich problems reported in the Multiple platform > build/check report for BioC 3.9 > To: <j...@iastate.edu> > > > [This is an automatically generated email. Please don't reply.] > > Hi TissueEnrich maintainer, > > According to the Multiple platform build/check report for BioC 3.9, > the TissueEnrich package has the following problem(s): > > o ERROR for 'R CMD build' on malbec2. See the details here: > > > https://master.bioconductor.org/checkResults/3.9/bioc-LATEST/TissueEnrich/malbec2-buildsrc.html > > Please take the time to address this by committing and pushing > changes to your package at git.bioconductor.org > > Notes: > > * This was the status of your package at the time this email was sent to > you. > Given that the online report is updated daily (in normal conditions) > you > could see something different when you visit the URL(s) above, > especially if > you do so several days after you received this email. > > * It is possible that the problems reported in this report are false > positives, > either because another package (from CRAN or Bioconductor) breaks your > package (if yours depends on it) or because of a Build System problem. > If this is the case, then you can ignore this email. > > * Please check the report again 24h after you've committed your changes > to the > package and make sure that all the problems have gone. > > * If you have questions about this report or need help with the > maintenance of your package, please use the Bioc-devel mailing list: > > https://bioconductor.org/help/mailing-list/ > > (all package maintainers are requested to subscribe to this list) > > For immediate notification of package build status, please > subscribe to your package's RSS feed. Information is at: > > https://bioconductor.org/developers/rss-feeds/ > > Thanks for contributing to the Bioconductor project! > > > > -- > Regards, > Ashish Jain > Ph.D. Candidate > Bioinformatics and Computational Biology > Iowa State University > Ph +1-317-529-7973 > Website: *https://ashishjain1988.github.io > <https://ashishjain1988.github.io/>/* > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. -- Regards, Ashish Jain Ph.D. Candidate Bioinformatics and Computational Biology Iowa State University Ph +1-317-529-7973 Website: *https://ashishjain1988.github.io <https://ashishjain1988.github.io/>/* [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
