Hi,
I am trying to download files using the GenomicDataCommons package.
Unfortunately, I encounter a cryptic error message most of the time.
Error: '{"data": {"hits": [], "pagination": {"count": 0, "sort": "", "from": 0,
"pages": 0, "total": 0, "page": 0, "size": 0}}, "warnings": {}}' does not exist
in current working directory
Please note, that I encounter this message 9 out of 10 times. The remaining 1
time,
The file download fails with a "User token has expired error” even though the
user
token was downloaded 30 secs ago.
I have also looked up the examples of the transfer function.
https://bioconductor.github.io/GenomicDataCommons/reference/transfer.html
<https://bioconductor.github.io/GenomicDataCommons/reference/transfer.html>
Even there, this cryptic error message is found in the examples.
Please note, that I am well-aware that I can provide the manifest
to the gdc-client and I will not have to worry about it. Still,
I would like to get to the bottom of this issue.
Can someone please provide some help/insights?
Koustav Pal, PhD
Post-Doctoral Fellow in Genome Architecture,
Computational Genomics Group,
IFOM - The FIRC Institute of Molecular Oncology,
Via Adamello 16,
20139 Milano, Italy.
Phone: +393441130157
E-mail: koustav....@ifom.eu
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