The error reported by the build system is reproducible on my mac running R CMD check on
banocc_1.8.0.tar.gz The check error is pretty terse. I turned your vignette into an R script using knitr::purl and ran into > compiled_banocc_model <- rstan::stan_model(model_code = banocc::banocc_model) DIAGNOSTIC(S) FROM PARSER: Info: integer division implicitly rounds to integer. Found int division: (P * (P - 1)) / 2 Positive values rounded down, negative values rounded up or down in platform-dependent way. *Error in compileCode(f, code, language = language, verbose = verbose) : * * Compilation ERROR, function(s)/method(s) not created! In file included from file15ef4c04043e.cpp:8:* *In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/model_header.hpp:4:* *In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math.hpp:4:* *In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:4:* *In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/core.hpp:5:* *In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/core/build_vari_array.hpp:4:* *In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:* *In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/l* *In addition: Warning message:* *In system(cmd, intern = !verbose) :* * running command '/Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB file15ef4c04043e.cpp 2> file15ef4c04043e.cpp.err.txt' had status 1* Selection: I don't know how to interpret this as I don't make much use of rstan. Even though you have not changed anything in this version of banocc, other software that you rely on may be changing ... perhaps https://github.com/stan-dev/rstan/issues/666 is relevant? On Mon, Jun 24, 2019 at 10:27 PM George Weingart <george.weing...@gmail.com> wrote: > Hello ! > > I am receiving these messages. > > We haven't changed anything in the package and all of a sudden we are > getting errors to the effect that the "vignette build failed" "because a > connect error" > > I do not know what causes the error (Since we haven't changed anything in > the package) and how to recreate it. > > Can you assist solving the issue ? > > Thanks! > > George Weingart PhD > Huttenhower Lab > Harvard School of Pubilc Health > > > > ---------- Forwarded message --------- > From: <bbs-nore...@bioconductor.org> > Date: Mon, Jun 24, 2019 at 11:36 AM > Subject: banocc problems reported in the Multiple platform build/check > report for BioC 3.9 > To: <george.weing...@gmail.com> > > > [This is an automatically generated email. Please don't reply.] > > Hi banocc maintainer, > > According to the Multiple platform build/check report for BioC 3.9, > the banocc package has the following problem(s): > > o ERROR for 'R CMD build' on malbec2. See the details here: > > > https://master.bioconductor.org/checkResults/3.9/bioc-LATEST/banocc/malbec2-buildsrc.html > > Please take the time to address this by committing and pushing > changes to your package at git.bioconductor.org > > Notes: > > * This was the status of your package at the time this email was sent to > you. > Given that the online report is updated daily (in normal conditions) > you > could see something different when you visit the URL(s) above, > especially if > you do so several days after you received this email. > > * It is possible that the problems reported in this report are false > positives, > either because another package (from CRAN or Bioconductor) breaks your > package (if yours depends on it) or because of a Build System problem. > If this is the case, then you can ignore this email. > > * Please check the report again 24h after you've committed your changes > to the > package and make sure that all the problems have gone. > > * If you have questions about this report or need help with the > maintenance of your package, please use the Bioc-devel mailing list: > > https://bioconductor.org/help/mailing-list/ > > (all package maintainers are requested to subscribe to this list) > > For immediate notification of package build status, please > subscribe to your package's RSS feed. Information is at: > > https://bioconductor.org/developers/rss-feeds/ > > Thanks for contributing to the Bioconductor project! > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- The information in this e-mail is intended only for the ...{{dropped:18}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
