No idea Jiping. I'm not sure I have any suggestions regarding that problem. 



> On May 28, 2019, at 2:55 PM, Jiping Wang <[email protected]> wrote:
> 
> It's interesting that if I logged in this computer by different account, ssh 
> -T git [email protected] does return a list of packages.
> So there might be some settings under my current user account on my computer. 
> What could it be? Do you have an suggestions?
> 
> On 5/28/19, 12:47 PM, "Turaga, Nitesh" <[email protected]> wrote:
> 
>    I see, I based my assumption that you access Github via HTTP protocol as 
> per your remotes.
> 
>    bash-3.2$ git remote -v
>    origin     
> https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_jipingw_NuPoP&d=DwIGaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=MzPN0f82008-zQrz9tigmiha_-r6wh9au957srxLM7E&m=xcgyZljQgqVITEW0oREb_wPqvafLgQHHHXWjwhxM5gQ&s=TuVLmBql1xhnBM2KOHt5VIlpN2TxNprVvFWlgLjcvSE&e=
>  (fetch)
>    origin     
> https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_jipingw_NuPoP&d=DwIGaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=MzPN0f82008-zQrz9tigmiha_-r6wh9au957srxLM7E&m=xcgyZljQgqVITEW0oREb_wPqvafLgQHHHXWjwhxM5gQ&s=TuVLmBql1xhnBM2KOHt5VIlpN2TxNprVvFWlgLjcvSE&e=
>  (push)
>    upstream   [email protected]:packages/NuPoP (fetch)
>    upstream   [email protected]:packages/NuPoP (push)
> 
>    If you are able to get SSH access to GitHub via the same key pair, these 
> are mirrored on to the Bioconductor git server as well. I'm back at square 
> one as per helping you debug this issue. 
> 
>    Can you try maybe a brand new key, and a different computer (even a VM 
> will do if you have access to one).
> 
>    Best,
> 
>    Nitesh 
> 
> 
> 
>> On May 28, 2019, at 1:43 PM, Jiping Wang <[email protected]> wrote:
>> 
>> Hi Nitesh, 
>> 
>>  Thanks for help. I am confused about " It seems you authenticate to GitHub 
>> using HTTP protocol, so most likely you enter a password."
>> 
>> When I do ssh to github, I received he authentication. Does it mean I am not 
>> using HTTP? I thought I am using SSH here. I didn't enter password either.
>> 
>> Jipings-MacBook-Pro-2:.ssh jon$ ssh -T [email protected] 
>> Hi jipingw! You've successfully authenticated, but GitHub does not provide 
>> shell access.
>> 
>> 
>> 
>> On 5/28/19, 12:39 PM, "Turaga, Nitesh" <[email protected]> wrote:
>> 
>>   At this point, I'd suggest two things,
>> 
>>   1. Create a new key, and try to use that new key by adding it in your 
>> BiocCredentials account. 
>> 
>>   2. Use a different computer? It might be something else entirely which we 
>> are missing. 
>> 
>>   I've double checked everything on Bioconductor's end of things, and it is 
>> configured correctly. 
>> 
>>   I've also noticed that you don't actually use your keys to get access to 
>> your Github account as well. It seems you authenticate to GitHub using HTTP 
>> protocol, so most likely you enter a password. I would also try to first 
>> authenticate with Github via the SSH key you are using.
>> 
>>   Best,
>> 
>>   Nitesh 
>> 
>> 
>>> On May 28, 2019, at 1:31 PM, Jiping Wang <[email protected]> wrote:
>>> 
>>> Still not working (my current key file is id_rsa, the other is the old one):
>>> 
>>> ~~~~~~~~~~~~~~~~`
>>> Jipings-MacBook-Pro-2:.ssh jon$ ls -lht
>>> total 64
>>> -rw-r--r--  1 jon  staff    98B May 24 20:02 config
>>> -rw-r--r--  1 jon  staff   228B May 24 19:47 config.back
>>> -rw-r--r--  1 jon  staff   5.3K May 24 14:32 known_hosts
>>> -r--------  1 jon  staff   749B May 24 14:15 id_rsa.pub
>>> -r--------  1 jon  staff   3.3K May 24 14:15 id_rsa
>>> -r--------  1 jon  staff   749B May 24 08:21 JWangNUGitHub.pub
>>> -r--------  1 jon  staff   3.4K May 24 08:21 JWangNUGitHub
>>> 
>>> ~~~~~~~~~~~~~~~~~~~~~~~
>>> Here is my config file:
>>> 
>>> host git.bioconductor.org
>>> HostName git.bioconductor.org
>>> IdentityFile ~/.ssh/id_rsa
>>> User git
>>> 
>>> On 5/28/19, 11:52 AM, "Turaga, Nitesh" <[email protected]> 
>>> wrote:
>>> 
>>>  What are the permissions on your SSH private key?
>>> 
>>>  Can you see what the permissions look like?
>>> 
>>>     cd .ssh
>>> 
>>>     ls -lht 
>>> 
>>>  Best,
>>> 
>>>  Nitesh 
>>> 
>>> 
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>> 
>> 
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> 
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