I added a response to your issue at
https://github.com/Bioconductor/Contributions/issues/1002#issuecomment-478991986
encouraging you (again) to avoid installing software on the user system; there
are basic problems with this approach, and the correct solution is to list
kallisto as a SystemDependency: in your DESCRIPTION file.
Maritn
On 4/2/19, 4:17 AM, "Bioc-devel on behalf of Julien Wollbrett"
<bioc-devel-boun...@r-project.org on behalf of julien.wollbrett@sib.swiss>
wrote:
Hello,
My package (called BgeeCall) is under review and passed R CMD Build and
R CMD Check for Linux and windows.
I still have an error on Mac. I tried to reproduce it using different
versions of R (3.5 and 3.6) and different OS
versions (Sierra and El Capitan). I tried on 5 different computers but
still not able to reproduce this error.
Does anyone have any idea on the origin of this error ? What should I
try to do to solve it?
dyld: Library not loaded: @rpath/libz.1.dylib
Referenced from:
/private/var/folders/gh/37kcv9bj20v2qnpgxq14hh1c0000gq/T/Rtmp7eA44u/Rbuild1406e51fd6e7f/BgeeCall/kallisto/kallisto
Reason: image not found
Will run kallisto using this command line :
/private/var/folders/gh/37kcv9bj20v2qnpgxq14hh1c0000gq/T/Rtmp7eA44u/Rbuild1406e51fd6e7f/BgeeCall/kallisto/kallisto
quant -i
/private/var/folders/gh/37kcv9bj20v2qnpgxq14hh1c0000gq/T/Rtmp7eA44u/Rbuild1406e51fd6e7f/BgeeCall/intergenic_0.1/6239/kallisto/transcriptome_WBcel235/transcriptome.idx
-o
/private/var/folders/gh/37kcv9bj20v2qnpgxq14hh1c0000gq/T/Rtmp7eA44u/Rbuild1406e51fd6e7f/BgeeCall/intergenic_0.1/6239/kallisto/transcriptome_WBcel235/annotation_WBcel235_84/SRX099901_subset
-t 1 --single -l 180 -s 30 --bias
/private/var/folders/gh/37kcv9bj20v2qnpgxq14hh1c0000gq/T/Rtmp7eA44u/Rinst1406e55617de6/BgeeCall/extdata/SRX099901_subset/SRR350955_subset.fastq.gz
dyld: Library not loaded: @rpath/libz.1.dylib
Referenced from:
/private/var/folders/gh/37kcv9bj20v2qnpgxq14hh1c0000gq/T/Rtmp7eA44u/Rbuild1406e51fd6e7f/BgeeCall/kallisto/kallisto
Reason: image not found
You can access to the submission issue here :
https://github.com/Bioconductor/Contributions/issues/1002
Thank you for your answers.
Julien Wollbrett
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