Hello, I created a package and submitted it to Bioconductor but I have a build error. Bioconductor 3.9 requires R version 3.6 and for the moment I only have version 3.5.2 on my computer. In the vignette of my package I use AnnotationHub 3.8 to load one fasta file and one gtf file. I have no error when I build the package in my computer but I have this error when the package is build on Bioconductor
http://bioconductor.org/spb_reports/BgeeCall_buildreport_20190312133742.html Isn't it possible to use AnnotationHub from Bioconductor 3.8 on a package present in Bioconductor 3.9 ? I also tried to use the AnnotationHub from Bioconcudtor 3.9 but I have an other error : http://bioconductor.org/spb_reports/BgeeCall_buildreport_20190312124437.html This error is not verbose enough to help me to understand it. the error comes from these lines : BiocManager::install("AnnotationHub", version = "3.8") library(AnnotationHub) ah <- AnnotationHub() ah_annotations <- query(ah, c("GTF","Ensembl", "Caenorhabditis elegans", "Caenorhabditis_elegans.WBcel235.84")) annotation_object <- ah_annotations[["AH50789"]] ah_transcriptomes <- query(ah, c("FaFile","Ensembl", "Caenorhabditis elegans", "Caenorhabditis_elegans.WBcel235")) path_to_transcriptome <- ah_transcriptomes[["AH49057"]]$path The best idea is probably to donwload the same R version on my computer than the one used to build packages in Bioconductor 3.9. As far as I know the last stable version of R is the 3.5.3. So could you tell me which beta version of R 3.6 is used in Bioconductor 3.9? It is the first package I submit to Bioconductor and I am a bit lost. So any suggestion is welcome :-). Thank you for your help. Best regards, Julien Wollbrett _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
