I tried to build/check your package locally and actually get a different ERROR in the build process ...
You might try using devtools::run_examples() - it runs only the examples in the package When I use devtools::run_examples() > ### Name: edgesToHubNetworks > ### Title: Convert a Two-column Matrix or Data Frame into a Hub Node List > ### Aliases: edgesToHubNetworks > > ### ** Examples > > interactor <- sapply(1:10000, function(index) + paste(c(sample(LETTERS, 3), sample(1:9, 1)), collapse = '')) > otherInteractor <- sapply(1:10000, function(index) + paste(c(sample(LETTERS, 3), sample(1:9, 1)), collapse = '')) > edges <- data.frame(interactor, otherInteractor, stringsAsFactors = FALSE) > edgesToHubNetworks(edges, minCardinality = 4) Error in object@sets[[1]] : subscript out of bounds In addition: Warning messages: 1: roxygen2 requires Encoding: UTF-8 2: Removed 2 rows containing missing values (geom_bar). Loading ClassifyR I ran this using Bioc 3.9 R 3.6 > sessionInfo() R Under development (unstable) (2018-12-10 r75821) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 14.04.5 LTS Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Dario Strbenac <dstr7...@uni.sydney.edu.au> Sent: Thursday, December 6, 2018 8:00:05 PM To: bioc-devel@r-project.org Subject: [Bioc-devel] ClassifyR Check Error on Linux and MacOS Systems Good day, There is an error for ClassifyR on malbec1 and merida1 caused by a documentation example. However, it doesn't occur on tokay1. Can I get more information about which example is emitting the error on malbec1 server? -------------------------------------- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
