So in the package I'm developing, I have a few specific use cases that make
BiocCheck not so happy.
1:
```
* WARNING: Avoid class()== or class()!= ; use is() or !is()
```
So my first problem arises with checking the classes of objects. I want the
interface to be such that I can allow for case insensitivity and/or allow the
object to be NULL in some specific cases. This is easier with using `class()`
explicitly (especially in the case of case sensitivity).
2:
```
* ERROR: At least 80% of man pages documenting exported objects
must have runnable examples. The following pages do not:
```
The second problem arises because of some of my exported functions. I made
parser+download functions for the Fantom5 data, as this was not available
anywhere inside a package yet. Because of the download being big/taking too
long, I want to avoid running the checks in R CMD check. For this I added
\dontrun{} at the examples, resulting in BiocCheck not liking this.
Other than that I just have some small notes that I still need to take care of,
but with these I am not sure what to do.
Thanks in advance,
-Casper
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