Hi Shweta, Please hold off making anymore commits to restfulSE. I’ve noticed some discrepancies in your package pre-release and post-release. I’ll try to correct it the best I can before letting you know.
The issues seem to be two-fold, duplicate commits and unusually large file package. Your BFG cleaning as we spoke off line succeeded in making the package size smaller, but it seems to have induced more issues as far as contamination of commit history goes. I’ll work on this in the next day or so, and let you know. You can then sync a fresh copy of the package on the Bioconductor git server. Best, Nitesh > On Oct 30, 2018, at 10:32 AM, Shweta Gopaulakrishnan > <re...@channing.harvard.edu> wrote: > > Hi Nitesh, > > Hope you are doing good ! I am working with bfg to reduce the size of > "restfulSE" package. I am able to do so with the github repository but not > with the bioconductor repository. > > The steps I am following for the bioconductor one is : > > > git clone --mirror g...@git.bioconductor.org:packages/restfulSE > > java -jar bfg.jar --strip-blobs-bigger-than 30M restfulSE.git > > cd restfulSE.git > > git reflog expire --expire=now --all && git gc --prune=now --aggressive > > git push > > I get an error : fatal: This operation must be run in a work tree > > Is there any other way to push changes upstream after bfg ? > > Thank you! > -- > Shweta Gopaulakrishnan, > Bioinformatician, > Channing Division of Network Medicine, > Brigham and Women's Health Hospital, > Boston,MA 02115 > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
