it looks like gmapR does not support Windows, and as a result, my MTseeker package cannot build on tokay1, so the Data package which requires it also cannot build on tokay1. Are there platform-specific dontrun capabilities?
http://bioconductor.org/spb_reports/MTseekerData_buildreport_20181010103212.html Short of somehow forcing gmapR to build on Windows, which I believe is beyond my control, is there a way to declare that parts of the MTseeker package are unsupported/unsupportable on Windows? I suppose I could cleave off the variant-recalling portions but that seems a little ridiculous. The original goal was to take the non-NuMT reads from a given alignment, realign (only) those to rCRS/RSRS, and call against that, for better mitochondrial haplogroup inference. We're still working towards the full version, but even just calling variants against rCRS with indels is hugely useful, and the ability to screen out haplogroup-specific variants while retaining indels, SNVs, etc. turns out to be VERY handy. More generally, there isn't any equivalent (AFAIK) in BioC, at all. --t [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
