Hi, Marcel Ramos told me a few months ago (July 24, 2018) that experiment data packages are now controlled the same way as software packages via GitHub. Today I finally tried synching the repos following these instructions http://bioconductor.org/developers/how-to/git/sync-existing-repositories/. I had to use the "git merge --allow-unrelated-histories upstream/master" step and resolve 3 small conflicts. It's almost all working well, the step I'm stuck at is:
$ git push upstream master Counting objects: 45, done. Delta compression using up to 4 threads. Compressing objects: 100% (38/38), done. Writing objects: 100% (45/45), 5.98 KiB | 1.50 MiB/s, done. Total 45 (delta 25), reused 5 (delta 4) remote: Error: Illegal version bump from '0.115.0' to '0.115.1'. Check remote: http://bioconductor.org/developers/how-to/version-numbering/ remote: for details To git.bioconductor.org:packages/derfinderData.git ! [remote rejected] master -> master (pre-receive hook declined) error: failed to push some refs to 'g...@git.bioconductor.org:packages/derfinderData.git' My guess is that the hook is looking at https://github.com/leekgroup/derfinderData/commit/90971f8c8f6b4116d939309942a781bc5f55d9d8 and thinks that I'm trying to bump from 0.103.1 to 0.115.1 while in reality the version at http://bioconductor.org/packages/devel/data/experiment/html/derfinderData.html is 0.115.0 (updated in https://github.com/leekgroup/derfinderData/commit/dbf71bbd4418be5a80a6060df8f5f16379a01cb3). Is there something I can do to make this work? GitHub: https://github.com/leekgroup/derfinderData Bioc-devel: http://bioconductor.org/packages/devel/data/experiment/html/derfinderData.html PS I guess that I don't need this file anymore: https://github.com/leekgroup/derfinderData/blob/master/external_data_store.txt nor the currently untracked svn files: $ git status On branch master Your branch is up to date with 'origin/master'. Untracked files: (use "git add <file>..." to include in what will be committed) data/.svn/ inst/extdata/.svn/ Best, Leo _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
