Also remember if you are referring to the Citation that appears on the landing pages - packages are built once a day and the landing page could take up to 2 days to reflect the CITATION change after you push changes to the git.bioconductor.org server with a valid version bump.
Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Martin Morgan <mtmorgan.b...@gmail.com> Sent: Wednesday, September 5, 2018 7:37:54 AM To: Xiangyu Luo Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect" Please note, there is no CITATION file anywhere in your repository! Verify this for yourself, if you like, by changing to a temporary location and making a new clone of your package git clone g...@git.bioconductor.org:pacakges/BUScorrect You have not added it to your local repository, or not committed the change to your local repository, or not pushed the commit successfully to the Bioconductor git repository. Why not try to add the CITATION file back to inst/, and show what you do to add, commit, and push your changes. Remember that you must update the repository at the remote git.bioconductor.org. Martin On 09/05/2018 06:26 AM, Xiangyu Luo wrote: > Dear Martin, > > For version 0.9.9, I inserted a CITATION into the "inst", but it did not > work. Therefore, in version 0.9.10, I took the CITATION file out of the > "inst", but it still did not work. Thank you so much for your patience > and guidance! > > Best regards, > > Xiangyu > > On Wed, Sep 5, 2018 at 6:20 PM Martin Morgan <mtmorgan.b...@gmail.com > <mailto:mtmorgan.b...@gmail.com>> wrote: > > after I > > git clone g...@git.bioconductor.org:packages/BUScorrect > > This is the log that I see > > BUScorrect master$ git log --name-only -n 2 > commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293 > Author: Xiangyu Luo <xyluo1...@gmail.com <mailto:xyluo1...@gmail.com>> > Date: Fri Aug 31 19:10:32 2018 +0800 > > version bump > > DESCRIPTION > > commit 1a61e2971a7cc213704797b99c5447847332b39f > Author: Xiangyu Luo <xyluo1...@gmail.com <mailto:xyluo1...@gmail.com>> > Date: Tue Aug 28 21:45:34 2018 +0800 > > version bump to 0.99.9 > > DESCRIPTION > > BUScorrect master$ ls inst/ > NEWS.Rd unitTests > > > Are you sure that you have added the citation file to your local git > repository, and pushed the local repository to git.bioconductor.org > <http://git.bioconductor.org>? > > On 09/05/2018 06:15 AM, Xiangyu Luo wrote: > > Dear Martin, > > > > Thank you very much for the information! I have pushed my changes, > > bumped the version, and waited for a successful nightly build, > but the > > citation result did not change. I am wondering whether the CITATION > > file should be in "inst" folder? > > > > Best, > > > > Xiangyu > > > > > > > > On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan > <mtmorgan.b...@gmail.com <mailto:mtmorgan.b...@gmail.com> > > <mailto:mtmorgan.b...@gmail.com > <mailto:mtmorgan.b...@gmail.com>>> wrote: > > > > Have you pushed your changes to > > g...@git.bioconductor.org:packages/BUScorrect and waited for a > > successful > > nightly build > > > > http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/ > > > > ? > > > > On 09/03/2018 07:10 AM, Xiangyu Luo wrote: > > > Dear All, > > > > > > The citation information of my "BUScorrect" R package is > shown as > > an R > > > package version (e.g., xxx, xxx, R package version > 0.99.10.), but > > I want it > > > to be my original paper (e.g., xxx, xxx, JournalName). > > > > > > I tried to manually insert the "CITATION" file in the "inst" > > folder, as > > > described in > > > > > > > https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files. > > > It works if the package is installed locally. However, > when the > > package is > > > installed from the Bioconductor platform, the citation is > still the R > > > package version. I am wondering how to change the citation on > > Bioconductor? > > > > > > Many thanks for your great help! > > > > > > Xiangyu > > > > > > [[alternative HTML version deleted]] > > > > > > _______________________________________________ > > > Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org> > <mailto:Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org>> > > mailing list > > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. 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