Hi all, I've just submitted updated versions of rhdf5 (2.25.7) and Rhdf5lib (1.3.2) to the BioC devel branch. These represent a significant change as the underlying version of HDF5 has now changed from 1.8.19 to 1.10.2. This has been done in response to an increasing prevalence of files that cannot be read with HDF5 1.8.
The most significant change from an R package point of view is that the internal handles for HDF5 objects switched to being 64bit integers, which are more tricky to deal with directly in R. Hopefully I have caught and handled these cases, and the packages are building/passing check for me on Linux and Windows. I have also run the tests distributed with HDF5Array, DelayedArray, and DelayedMatrixStats and all seem fine. However, if you encounter a new and exciting error please reply here or open an issue at https://github.com/grimbough/rhdf5/issues HDF5 1.10 provides a number of new features that you can read about at https://support.hdfgroup.org/HDF5/docNewFeatures/ If you need access to one of these and it's not obviously available via rhdf5 then again please contact me & I'll prioritise things accordingly. Thanks, Mike [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
