You could see if there are any appropriate chain files provided in AnnotationHub (https://bioconductor.org/packages/release/bioc/html/AnnotationHub.html)
library(AnnotationHub) ah = AnnotationHub( ) query(ah, "chain file") or investigate other packages that do similar functions or address a similar types of data - they might have data you could use for the example as well. https://bioconductor.org/packages/release/BiocViews.html# Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Ghiwa Khalil <ghiwa.kha...@lau.edu> Sent: Friday, August 3, 2018 4:23:35 AM To: bioc-devel@r-project.org Subject: EXTERNAL: [Bioc-devel] Question about package development To whom it may concern, I am Ghiwa a research assistant at Dr.Pierre Khoeuiry bioinformatic's lab at the American University of Beirut. We are currently building our package and we have a question, we hope you can help us with. While writing the documentation for the function(.Rd file) the examples section is mandatory, but our function uses chrom.sizes and chain files which should be user provided. How can we address this while writing the example? Should we include a chrom.sizes file and a chain file in the inst folder to allow the example to run? And the disadvantage of that would be that the package would be large since the chain file is a large file. Any recommendations? Thank you. Regards, Ghiwa [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
