For RELEASE 3.7 you need to push changes to the git.bioconductor.org
repository RELEASE_3_7 branch with a version bump to 1.0.1. See
http://bioconductor.org/developers/how-to/git/maintain-bioc-only/#optional-merge-changes-to-the-current-release-branch
remember that changes to the release branch should be 'bug fixes', not
new features.
Martin
On 07/10/2018 01:08 PM, Ahrim Youn wrote:
Dear Martin,
The updates that I made to man files are not reflected in the manual of
the package (release 3.7) :
https://bioconductor.org/packages/release/bioc/manuals/BiFET/man/BiFET.pdf
In fact, I found that all files in the release_3_7 are old files that were
not updated since January and not in sync with the files in GitHub
repository.
How can I update the files in the release_3_7?
Thank you very much for your help,
Ahrim
On 7/3/18, 11:09 AM, "Nathan Lawlor" <nathan.law...@jax.org> wrote:
Apologies, I meant to say July 2nd, not June 2nd.
On 7/3/18, 11:03 AM, "Nathan Lawlor" <nathan.law...@jax.org> wrote:
Hi Ahrim,
I forget exactly when the nightly build/check reports occur for
Bioconductor packages but looking at the BiFET report: (BiFET:
http://bioconductor.org/checkResults/devel/bioc-LATEST/BiFET/) it looks
like the build for June 2nd has not yet been updated? So any changes you
made on June 2nd won’t be reflected just yet
Best,
Nathan
On 7/3/18, 10:28 AM, "Ahrim Youn" <ahrim.y...@jax.org> wrote:
Dear Martin,
Thank you for your answer. I updated the man/ files and bumped the
version
in the DESCRIPTION file yesterday, but the change is not reflected in
the
manual of the package.
Ahrim
On 6/30/18, 11:32 AM, "Martin Morgan" <martin.mor...@roswellpark.org>
wrote:
(cc'ing bioc-devel, where questions like this should be posted so other
developers can benefit / contribute)
I see
commit 5fea2c1f2e0f3407cb6804db638b565e0a2ea5dd
Author: Ahrim Youn <yo...@mlg-jgm164.local.jax.org>
Date: Fri Jun 22 16:34:02 2018 -0400
update version number
DESCRIPTION | 2 +-
R/library_function.r | 12 ++++++------
2 files changed, 7 insertions(+), 7 deletions(-)
where you changed the R/ file roxygen comment but did not regenerate
the
documentation, I guess with
devtools::document()
The build system does not do this for you. So Update the man/ files and
bump the version.
Martin
On 06/30/2018 10:55 AM, Ahrim Youn wrote:
Hi,
I¹m a maintainer of the package BiFET and I¹m having a problem in
changing the manual of the package :
http://bioconductor.org/packages/devel/bioc/manuals/BiFET/man/BiFET.pd
f
I changed the comments in the main R function which is linked to the
manual, and updated it to both github and biocondutor, but the manual
pdf file does not change.
What is interesting is that the Vignette which I also updated is
updating according to my change :
http://bioconductor.org/packages/devel/bioc/vignettes/BiFET/inst/doc/B
i
F
E
T.html
Do you know why the manual pdf file does not update?
Thanks for your help!
Best,
Ahrim
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