Next time try to add a little more frame of reference (ie. I've submitted my
package brainImageR and the tracker build report is showing ERROR)
I cloned your repository and took a quick peak -
You are using roxygen2 to make your man files
So It looks like you updated the documentation in the Comp.R but never ran the
document() function to have the man file update and also be pushed to github.
The man file example still has the original code that is a table not numeric.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Sara Linker
<slin...@salk.edu>
Sent: Wednesday, May 30, 2018 10:43:37 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] build report repeating the same error
Hi at bioc-devel,
I�ve tried a few times now to update the error reported in the build report.
I�ve pushed the fix to GitHub and bumped the version number, but the same error
message keeps coming back. Does anyone know how to fix this? I feel like a
reboot of some kind is needed.
ERROR MESSAGE:
> ### ** Examples
>
> comp <- methods::new(Class="Comp",
+ tissueExp1 = c(10,12),
+ tissueExp2 = table(c(rep("A",5), rep("B",5))),
+ composite = matrix(0,nrow=10,ncol=10),
+ random.matrix = data.frame(matrix(0,nrow=10,ncol=10)),
+ refset = "developing"
+ )
Error in validObject(.Object) :
invalid class "Comp" object: invalid object for slot "tissueExp2" in class
"Comp": got class "table", should be or extend class "numeric"
Calls: <Anonymous> -> initialize -> initialize -> validObject
Execution halted
BUT I�ve fixed this and my current code (on GitHub) now reads�
#' @examples
#' comp <- methods::new(Class="Comp",
#' tissueExp1 = c(10,12),
#' tissueExp2 = c(10,13),
#' composite = matrix(0,nrow=10,ncol=10),
#' random.matrix = data.frame(matrix(0,nrow=10,ncol=10)),
#' refset = "developing"
#' )
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