The package throwing error is*VariantAnnotation *(coming from function: locateVariants). I checked it's build for the dev branch and indeed it's broken. **
All right then I would remove version specification from my package and I guess I'll wait for**VariantAnnotation to get fixed. Best, Vivek On 05/30/2018 04:04 PM, Martin Morgan wrote: > There is no cache; like users you get the 'current' version of the > package from the relevant repository. If your package used > concatenateObjects, then it needs to be updated. If your package is > broken through a third package, it needs to be fixed (perhaps it has > been but did not propagate, see the build reports for packages in the > devel branch http://bioconductor.org/checkResults/ , and look for the > stoplight at the right). > > Martin > > On 05/30/2018 09:56 AM, Vivek Bhardwaj wrote: >> Hi All >> >> Is there any build cache on bioc build system? I updated S4Vector and >> IRanges in my dependencies and triggered a new build of my package, only >> to find that this broke other dependencies due to renaming of function >> `concatenateObjects ` to `bindRows` in S4Vector. Now I removed the >> mentioned versions in my DESCRIPTION, but the build is still broken. >> Also tried specifying a particular version of these packages and I get >> the error : >> >> ** byte-compile and prepare package for lazy loading Error in >> loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = >> vI[[j]]) : namespace 'IRanges' 2.15.13 is already loaded, but == 2.14.10 >> is required >> >> How do I refresh the cache? >> > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the > employee or agent responsible for the delivery of this message to the > intended recipient(s), you are hereby notified that any disclosure, > copying, distribution, or use of this email message is prohibited. If > you have received this message in error, please notify the sender > immediately by e-mail and delete this email message from your > computer. Thank you. -- Best Wishes Vivek -------- *Vivek Bhardwaj* PhD Candidate | International Max Planck Research School Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51, Freiburg E-mail: bhard...@ie-freiburg.mpg.de Tel: +49-761-5108-472 Website: https://vivekbhr.github.io [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
