Yes, when a new version appears on CRAN it is automatically picked up by the
build machines.
Valerie
On 05/14/2018 05:04 AM, Kevin Horan wrote:
Valerie,
Sorry, I think my memory of what the actual problem was was wrong. I have
spoken to the rsvg author and he has now fixed the build of rsvg in CRAN for OS
X. So will that then just get automatically put on your machines, or else,
would it now be possible to manually put it on? Sorry for all the confusion,
and thanks for you help.
ChemmineR is green now because I removed the functions requiring rsvg to
get it through the release. They were new functions anyway.
Kevin
On 05/09/2018 03:25 PM, Obenchain, Valerie wrote:
Kevin,
I feel like we're not on the same page. We've had this discussion and both
Herve and I tried to explain the situation:
https://stat.ethz.ch/pipermail/bioc-devel/2018-February/012812.html
We do not build CRAN packages from source on the Windows and Mac build
machines. If a CRAN binary is not available for one of your dependencies, e.g.,
rsvg, the best thing for you to do is contact the maintainer or post on the
r-sig-mac mailing list:
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
However, ChemmineR is green on both release and devel build reports. I'm not
sure why you are asking us (again) to install the rsvg system dependency on the
Mac builders. Did I misunderstand what you wanted?
Valerie
On 05/09/2018 07:41 AM, Kevin Horan wrote:
Now that this past bioc release is done, and R 3.5 is stable, would it be
possible to install the "rsvg" package on your build machines? Thanks.
Kevin
On 02/19/2018 02:01 PM, Alexey Sergushichev wrote:
Valerie, thanks. Will try to ask there.
However, after looking through the mailing list it looks like R-devel builds
for OS X aren't trivial and aren't part of CRAN...
--
Alexey
On Mon, Feb 19, 2018 at 9:05 PM, Obenchain, Valerie
<valerie.obench...@roswellpark.org<mailto:valerie.obench...@roswellpark.org>>
wrote:
Hi,
There has been some discussion of the devel Mac binaries on the R-SIG-Mac
mailing list. That list would be the best place to ask this question.
https://stat.ethz.ch/pipermail/r-sig-mac/2018-January/thread.html
Valerie
On 02/19/2018 08:32 AM, Alexey Sergushichev wrote:
Valerie,
Are there any estimates on how often CRAN OS X builds happen? There are still
no builds for rsvg and other packages...
Thanks,
Alexey
On Wed, Feb 7, 2018 at 8:09 PM, Obenchain, Valerie
<valerie.obench...@roswellpark.org<mailto:valerie.obench...@roswellpark.org>>
wrote:
Hi Kevin,
CRAN binaries for El Capitan in devel aren't available. You can see this on the
rsvg landing page:
https://cran.r-project.org/web/packages/rsvg/index.html
Nothing we can do until CRAN makes them available.
Valerie
On 02/07/2018 08:29 AM, Kevin Horan wrote:
The ChemmineR build is failing on the mac due to a new dependency not
being available, the package "rsvg". Would it be possible to install
that on the mac build machine? Thanks.
http://bioconductor.org/checkResults/devel/bioc-LATEST/ChemmineR/merida2-install.html
Kevin
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