Not sure if this could be the case - but do you have the package installed in
multiple locations / multiple .libPaths() perhaps it is picking up the
package version that is in a different location?
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Nicolas
Descostes <nicolas.descos...@gmail.com>
Sent: Thursday, May 10, 2018 5:44:43 PM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] biocValid() and package version
Hi,
I am using R-devel with R 3.5 as my package will be released with this
version.
I want to make sure that I am using the latest version of all packages:
library("BiocInstaller")
biocValid()
Installed Built ReposVer
airway "0.112.0" "3.4.3" "0.115.0"
annotate "1.56.1" "3.4.3" "1.59.0"
[..]
ShortRead "1.36.0" "3.4.3" "1.39.0"
library("ShortRead")
> packageVersion("ShortRead")
[1] �1.39.0�
Do you know why biocValid() is not catching the right installed version? I
found a similar post here (
https://stat.ethz.ch/pipermail/bioc-devel/2014-November/006602.html) but
could not find the answer.
Thanks,
Nicolas
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