On 05/10/2018 12:13 PM, Kenneth Condon wrote:
Hi all,
It sounds like the best thing to do is go back to the original binary and
remove the source installation.
Clarice, you know I can't even remember if I did that - I think I might try
fix the current dependency issue tomorrow, but if any more come up, Ill go
back to the begining do as you suggested with the binary again.
Herve, the link I provided has R3.4.4 .deb binaries from 2018 - not sure
where you are getting the 2014 from.
According to the link I sent you, CRAN provides R .deb packages for the
following versions of Ubuntu: Artful Aardvark (17.10), Zesty Zapus
(17.04), Xenial Xerus (16.04; LTS), and Trusty Tahr (14.04; LTS).
You provided a link to .deb packages for Ubuntu Trusty. Ubuntu Trusty
is from 2014 so is somewhat outdated. With an EOL scheduled for next
year I think.
Anyway, I don't see any R 3.5.0 .deb package on CRAN for any of
these Ubuntu versions yet. Please make sure to check the link I sent
you. It tells you what to do if you have questions about those packages.
Cheers,
H.
Thanks,
Kenneth
On Thu, May 10, 2018 at 7:43 PM, Clarice Groeneveld <
clari.groenev...@gmail.com> wrote:
Hi Kenneth,
I see you're on Ubuntu 14.04. Have you tried in Terminal:
sudo apt-get update
sudo apt-get upgrade
to upgrade your R version?
Best,
Clarice.
Em qui, 10 de mai de 2018 às 14:20, Kenneth Condon <roonysga...@gmail.com>
escreveu:
Hi all,
I want to submit a package to bioconductor this week but first I want to
build it on the latest R 3.5 release (with bioconductor 3.7). However,
CRAN
only has 3.4 binaries
<https://urldefense.proofpoint.com/v2/url?u=https-3A__cran.r-2Dproject.org_bin_linux_ubuntu_trusty_-3FC-3DN-3BO-3DA&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=rgKDL-SEoO8XpuX4jdMnUPYoVWS4DaJ9O2LcugvN5mY&s=o5QNX-FSUAzZdmBhik0P991kwi874S7MpTVvzrXDco0&e=>
so I've had
to build 3.5 from source which has unfortunately sent me to dependency
hell.
Rather than spending the next 3 days fixing all dependencies, does anyone
know when the 3.5 dependency is likely to surface?
I think bioconductor 3.7 cannot be installed on R 3.4 so any advice would
be appreciated.
Thanks,
Kenneth.
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--
Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
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E-mail: hpa...@fredhutch.org
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