Hi Nitesh, I did a fresh clone, updated the package, and committed the changes, but am still unable to push to the bioc git repo. Requested output below.
$ git clone g...@git.bioconductor.org:packages/bsseqData # Make updates and commit $ git push origin master Counting objects: 7, done. Delta compression using up to 4 threads. Compressing objects: 100% (7/7), done. Writing objects: 100% (7/7), 67.52 MiB | 1.35 MiB/s, done. Total 7 (delta 2), reused 0 (delta 0) remote: Error: file larger than 5 Mb. remote: remote: File name: 'data/BS.cancer.ex.fit.rda' remote: File size: 41.5 Mb remote: remote: Please see Biocondcutor guidelines remote: https://bioconductor.org/developers/package-guidelines/ remote: To git.bioconductor.org:packages/bsseqData ! [remote rejected] master -> master (pre-receive hook declined) error: failed to push some refs to 'g...@git.bioconductor.org:packages/bsseqData' $ git remote -v origin g...@git.bioconductor.org:packages/bsseqData (fetch) origin g...@git.bioconductor.org:packages/bsseqData (push) $ tree .git/hooks/ .git/hooks/ ├── applypatch-msg.sample ├── commit-msg.sample ├── post-update.sample ├── pre-applypatch.sample ├── pre-commit.sample ├── pre-push.sample ├── pre-rebase.sample ├── pre-receive.sample ├── prepare-commit-msg.sample └── update.sample $ git branch -a * master remotes/origin/HEAD -> origin/master remotes/origin/RELEASE_2_13 remotes/origin/RELEASE_2_14 remotes/origin/RELEASE_3_0 remotes/origin/RELEASE_3_1 remotes/origin/RELEASE_3_2 remotes/origin/RELEASE_3_3 remotes/origin/RELEASE_3_4 remotes/origin/RELEASE_3_5 remotes/origin/RELEASE_3_6 remotes/origin/RELEASE_3_7 remotes/origin/master $ git log commit 5eb4c1ebc03fb1d713e873a77570744b94dc7659 Author: Peter Hickey <peter.hic...@gmail.com> Date: Wed May 2 13:14:24 2018 -0400 Run updateObject() on serialized objects commit 153db702379b926743f26012a34c8076b37f91f9 Author: Nitesh Turaga <nitesh.tur...@gmail.com> Date: Mon Apr 30 10:34:47 2018 -0400 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch commit e02c0503b1f75b5ec4caffd055645d3b060d2af9 Author: Nitesh Turaga <nitesh.tur...@gmail.com> Date: Mon Apr 30 10:31:27 2018 -0400 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch commit 3f87e4d027264396bdeeeb87baa68fb3b6662b46 Author: Peter Hickey <peter.hic...@gmail.com> Date: Sun Apr 29 12:31:34 2018 -0400 Bump minimum version of bsseq # git log output continues On Wed, 2 May 2018 at 11:36 Turaga, Nitesh <nitesh.tur...@roswellpark.org> wrote: > > Hi Pete, > > Can you try once again please? And this time send me the following > information if it doesn’t work. > > git remote -v > > and > > ls -r (or tree) .git/hooks/ > > and > > git branch -a > > > Thanks, > > Nitesh > > > > On Apr 29, 2018, at 11:22 PM, Peter Hickey <peter.hic...@gmail.com> wrote: > > > > Sure thing, we'll wait. Thanks, Val > > > > On Sun., 29 Apr. 2018, 9:01 pm Obenchain, Valerie, > > <valerie.obench...@roswellpark.org> wrote: > > Hi guys, > > > > I'm not sure if this got resolved. If it didn't, I'd recommend waiting > > until after the 3.7 branching tomorrow. > > > > Thanks. > > Val > > > > > > > > On 04/29/2018 09:37 AM, Peter Hickey wrote: > >> I'm still unable to push large files after a fresh clone. I *am* able to > >> push smaller changes (I just tweaked the DESCRIPTION to test this). But I > >> get the "Error: file larger than 5 Mb" error when I try to update larger > >> objects (e.g., BS.cancer.ex.fit.rda which is 40.8 Mb). > >> > >> On Sun, 29 Apr 2018 at 11:43 Turaga, Nitesh > >> <nitesh.tur...@roswellpark.org> wrote: > >> Can you try with a fresh clone of the repo? > >> > >> Best, > >> > >> Nitesh > >> > >> > On Apr 29, 2018, at 10:21 AM, Peter Hickey <peter.hic...@gmail.com> > >> > wrote: > >> > > >> > Nitesh, I am still getting the "Error: file larger than 5 Mb" error. > >> > > >> > On Sun, 29 Apr 2018 at 09:59 Turaga, Nitesh > >> > <nitesh.tur...@roswellpark.org> wrote: > >> > Hi Pete, > >> > > >> > This should be resolved now. > >> > > >> > Best, > >> > > >> > Nitesh > >> > > On Apr 29, 2018, at 9:50 AM, Peter Hickey <peter.hic...@gmail.com> > >> > > wrote: > >> > > > >> > > Thanks, Val. I'm getting an error about "too large files" when I try to > >> > > push (see below). Is there a different workflow for pushing an > >> > > experiment > >> > > data package or am I doing something else wrong? bsseqData predates > >> > > the svn > >> > > -> git transition. > >> > > > >> > > Thanks, > >> > > Pete > >> > > > >> > > $ git push origin master > >> > > Counting objects: 7, done. > >> > > Delta compression using up to 4 threads. > >> > > Compressing objects: 100% (7/7), done. > >> > > Writing objects: 100% (7/7), 66.80 MiB | 693.00 KiB/s, done. > >> > > Total 7 (delta 2), reused 0 (delta 0) > >> > > remote: Error: file larger than 5 Mb. > >> > > remote: > >> > > remote: File name: 'data/BS.cancer.ex.fit.rda' > >> > > remote: File size: 40.8 Mb > >> > > remote: > >> > > remote: Please see Biocondcutor guidelines > >> > > remote: https://bioconductor.org/developers/package-guidelines/ > >> > > remote: > >> > > To git.bioconductor.org:packages/bsseqData.git > >> > > ! [remote rejected] master -> master (pre-receive hook declined) > >> > > error: failed to push some refs to > >> > > 'g...@git.bioconductor.org:packages/bsseqData.git' > >> > > > >> > > > >> > > On Sat, 28 Apr 2018 at 19:17 Obenchain, Valerie < > >> > > valerie.obench...@roswellpark.org> wrote: > >> > > > >> > >> I've just given you and Pete access. Please give it a try and let me > >> > >> know > >> > >> if you have problems. > >> > >> > >> > >> Val > >> > >> > >> > >> On 04/28/2018 10:50 AM, Kasper Daniel Hansen wrote: > >> > >> > >> > >> Could Pete and I get write access to bsseqData? > >> > >> > >> > >> Best, > >> > >> Kasper > >> > >> > >> > >> [[alternative HTML version deleted]] > >> > >> > >> > >> _______________________________________________ > >> > >> Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list > >> > >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> This email message may contain legally privileged and/or confidential > >> > >> information. If you are not the intended recipient(s), or the > >> > >> employee or > >> > >> agent responsible for the delivery of this message to the intended > >> > >> recipient(s), you are hereby notified that any disclosure, copying, > >> > >> distribution, or use of this email message is prohibited. 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