The package will have a release version. The branches are frozen now to
proceed with the release branching. If the ERROR persists this just means you
will have to update your fix on the RELEASE_3_7 branch and the devel (master)
branch. There will be an email notification when pushes can resume to the git
server.
Cheers,
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Kangeyan, Divy
<divyswa...@g.harvard.edu>
Sent: Monday, April 30, 2018 10:16:59 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Last minute error in the build
Hi,
I am the author of *scmeth* package that was submitted during this
cycle. I know that there will be a new bioconductor release tomorrow. My
package has been passing all the builds until April 27th which is past
April 25th, the deadline to pass R CMD check and R CMD build. Now I see
errors in the nightly builds which probably happened over the weekend.
Following is the error:
Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
HDF5Matrix object uses internal representation from DelayedArray
>= 0.5.11 and < 0.5.24 and cannot be displayed or used. Please update it with:
object <- updateObject(object, verbose=TRUE)
and re-serialize it.
Execution halted
The error looks like it is related to a deprecated object in my vignette. I
am not sure whether this is something that I have to update in the new
development version or something that I can resolve now. Considering the
new release is tomorrow and all the builds passed beyond the deadline I am
wondering whether the package will have a release version?
Thank you,
Divy
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the employee or
agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited. If you have received
this message in error, please notify the sender immediately by e-mail and
delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
