Hi all, I was using parallel::mclapply() but have been encouraged to substitute it with BiocParallel::bplapply().
BiocParallel::bplapply(data, BPPARAM = BiocParallel::MulticoreParam(workers =x ), FUN =...).... I never had problems with the code. Now the package got accepted and moved to the bioconductor-repository and suddenly I am getting errors in the vignette build when asking for 5 workers: "Error in serialize(data, node$con, xdr = FALSE) : error writing to connection" After reducing the number of requested workers to 3 my package passed under linux (malbec2 and malbec1) but still fails under OS X (merida2): "Error : failed to stop ‘SOCKcluster’ cluster: error writing to connection " https://master.bioconductor.org/checkResults/3.7/bioc-LATEST/ChIC/merida2-buildsrc.html Does anyone have an idea what is going on? Am I not supposed to ask for more then 1 worker in the vignette? What if I just switch back to parallel::mclapply? Thank you, Carmen // [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
