The solution is, in the NAMESPACE, to import only those functions used
importFrom(SummarizedExperiment, "start", "end")
importFrom(stats, "mean")
or to import everything but
importFrom(stats, except = c(start, end))
or to explicitly resolve symbols in the code and not mention them in the
NAMESPACE file.
SummarizedExperiment::start(...)
Each of these styles is supported by roxygen2.
Martin
On 04/14/2018 08:37 PM, Ruqian Lyu wrote:
Hi guys,
I have identified the problem.
It's the packages I imported have same function name, so the previous
functions get overwritten.
Thanks
Ruqian
On Sun, Apr 15, 2018 at 10:18 AM, Ruqian Lyu <ruqi...@student.unimelb.edu.au
wrote:
Hi guys,
I'm wondering if any of you have met this warning message :
Warning: replacing previous import 'SummarizedExperiment::start' by
'stats::start' when loading 'singscore'
Warning: replacing previous import 'SummarizedExperiment::end' by 'stats::end'
when loading 'singscore'
I have import SummarizedExperiment in my DESCRIPTION and NAMESPACE.
The package passed R CMD Check and BiocCheck without warnings. But the
build report returned the warnings above.
Link to the report:
http://bioconductor.org/spb_reports/singscore_buildreport_
20180414041637.html
I'm not sure why this is happening.
Any help will be appreciated.
Thanks!
Regards,
Ruqian
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