Thanks, Nitesh! Since it is a released version, I thought I will get input from you first. I will try #8 and let you know if it does not work.
Best regards, Julie > On Mar 29, 2018, at 1:59 PM, Turaga, Nitesh <nitesh.tur...@roswellpark.org> > wrote: > > Hi Julie, > > Did you try #8 from the documentation pointed out by the error message? > > Take a look at the documentation to fix this, > https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_developers_how-2Dto_git_sync-2Dexisting-2Drepositories_&d=DwIGaQ&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=OG7WMDBqoQVKJFHZTsUdWZqvKVtXFuNzXCJTP2tT3Ew&s=ulmFiIgA6VkaJJI8iAtWRnQRGa9F_KC7J_dGgxhi-3I&e=, > particularly, point #8 (force Bioconductor master to Github master). > > The idea is to force sync your Github repo, with what exists on Bioconductor. > > Let me know if this works. > > Best, > > Nitesh > > >> On Mar 28, 2018, at 4:23 PM, Zhu, Lihua (Julie) <julie....@umassmed.edu> >> wrote: >> >> Nitesh, >> >> I am trying to fix the following error in the released version by adding the >> correct encoding in the DESCRIPTION file. However, I encountered the >> following message. Could you please help? Thanks! >> >> Best regards, >> >> Julie >> >> git push upstream RELEASE_3_6 >> >> Counting objects: 401, done. >> Delta compression using up to 8 threads. >> Compressing objects: 100% (135/135), done. >> Writing objects: 100% (401/401), 103.37 MiB | 15.55 MiB/s, done. >> Total 401 (delta 294), reused 355 (delta 257) >> remote: Resolving deltas: 100% (294/294), completed with 23 local objects. >> remote: Error: duplicate commits. >> remote: >> remote: There are duplicate commits in your commit history, These cannot be >> remote: pushed to the Bioconductor git server. Please make sure that this is >> remote: resolved. >> remote: >> remote: Take a look at the documentation to fix this, >> remote: >> https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_developers_how-2Dto_git_sync-2Dexisting-2Drepositories_&d=DwIGaQ&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=OG7WMDBqoQVKJFHZTsUdWZqvKVtXFuNzXCJTP2tT3Ew&s=ulmFiIgA6VkaJJI8iAtWRnQRGa9F_KC7J_dGgxhi-3I&e=, >> remote: particularly, point #8 (force Bioconductor master to Github master). >> remote: >> remote: For more information, or help resolving this issue, contact >> remote: <bioc-devel@r-project.org>. Provide the error, the package name and >> remote: any other details we might need. >> remote: >> remote: Use >> remote: >> remote: git show c2479629841859aaa49b97f391bfe593555e0f01 >> remote: git show 1d6bbf4039de44f8692dcecb6f160d32332375a7 >> remote: >> remote: to see body of commits. >> remote: >> To >> https://urldefense.proofpoint.com/v2/url?u=http-3A__git.bioconductor.org&d=DwIGaQ&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=OG7WMDBqoQVKJFHZTsUdWZqvKVtXFuNzXCJTP2tT3Ew&s=fKHTvRcM_qA273rntN5pKeY64ugxsWi18nY7fujtkVg&e=:packages/GUIDEseq.git >> ! [remote rejected] RELEASE_3_6 -> RELEASE_3_6 (pre-receive hook declined) >> error: failed to push some refs to >> 'g...@git.bioconductor.org:packages/GUIDEseq.git' >> >> >> On 3/28/18, 3:10 PM, "bbs-nore...@bioconductor.org" >> <bbs-nore...@bioconductor.org> wrote: >> >> [This is an automatically generated email. Please don't reply.] >> >> Hi GUIDEseq maintainer, >> >> According to the Multiple platform build/check report for BioC 3.6, >> the GUIDEseq package has the following problem(s): >> >> o ERROR for 'R CMD INSTALL' on malbec1. See the details here: >> >> https://urldefense.proofpoint.com/v2/url?u=https-3A__master.bioconductor.org_checkResults_3.6_bioc-2DLATEST_GUIDEseq_malbec1-2Dinstall.html&d=DwIBAg&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=y48XkJjUXE37oYzjnEKE0XU2TEuoXk6-6dGUJl4KtxE&s=zLAhZJZFZQDA3vBaCZj9-XewRgQ4usUa-1nqq76LpbA&e= >> >> o ERROR for 'R CMD build' on malbec1. See the details here: >> >> https://urldefense.proofpoint.com/v2/url?u=https-3A__master.bioconductor.org_checkResults_3.6_bioc-2DLATEST_GUIDEseq_malbec1-2Dbuildsrc.html&d=DwIBAg&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=y48XkJjUXE37oYzjnEKE0XU2TEuoXk6-6dGUJl4KtxE&s=x7RWQGG-QihmXuNRTVPm_zTTf6LNdEyaAMFhO3SCsxk&e= >> >> Please take the time to address this by committing and pushing >> changes to your package at >> https://urldefense.proofpoint.com/v2/url?u=http-3A__git.bioconductor.org&d=DwIBAg&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=y48XkJjUXE37oYzjnEKE0XU2TEuoXk6-6dGUJl4KtxE&s=FzPy60AJ_IqYrWU_CO1n-OssQeuoyFUlKnoiJusbaRM&e= >> >> Notes: >> >> * This was the status of your package at the time this email was sent to >> you. >> Given that the online report is updated daily (in normal conditions) >> you >> could see something different when you visit the URL(s) above, >> especially if >> you do so several days after you received this email. >> >> * It is possible that the problems reported in this report are false >> positives, >> either because another package (from CRAN or Bioconductor) breaks your >> package (if yours depends on it) or because of a Build System problem. >> If this is the case, then you can ignore this email. >> >> * Please check the report again 24h after you've committed your changes >> to the >> package and make sure that all the problems have gone. >> >> * If you have questions about this report or need help with the >> maintenance of your package, please use the Bioc-devel mailing list: >> >> >> https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_help_mailing-2Dlist_&d=DwIBAg&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=y48XkJjUXE37oYzjnEKE0XU2TEuoXk6-6dGUJl4KtxE&s=DiX130a6NZREvmXdgX9TptApnY4PYi1yL-R3wKc4seg&e= >> >> (all package maintainers are requested to subscribe to this list) >> >> For immediate notification of package build status, please >> subscribe to your package's RSS feed. Information is at: >> >> >> https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_developers_rss-2Dfeeds_&d=DwIBAg&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=y48XkJjUXE37oYzjnEKE0XU2TEuoXk6-6dGUJl4KtxE&s=MJeXmP_7rxgHKLZRnbKROua8htsr7UngLq_SxDtGt_g&e= >> >> Thanks for contributing to the Bioconductor project! >> >> >> > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. 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