25x faster for what it does I guess, which appears to be counting overlaps to an indexed database of BED files. It's nice to see an indexing scheme that unlike tabix is actually useful for something other than finding an offset to a compressed block.
On Tue, Feb 27, 2018 at 10:03 AM, Vincent Carey <st...@channing.harvard.edu> wrote: > I just noticed the nature methods paper on giggle, which is "25x faster > than bedtools". Has anyone tried to deploy or interface? > > https://github.com/ryanlayer/giggle > > has a link to biorxiv, paper in current nature methods > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
