Thanks! I ended up putting the references in the YAML rather than as a separate bib file.
On Mon, Jan 29, 2018 at 5:27 PM, Kasper Daniel Hansen < kasperdanielhan...@gmail.com> wrote: > Put the bib file in /vignettes. Perhaps see a couple of packages for > examples, including how to use BiocStyle > > On Mon, Jan 29, 2018 at 3:26 PM, Armen Abnousi <a.abno...@gmail.com> > wrote: > >> Thanks for your answers, that helped but now there is another issue. The >> vignette in vignettes/ directory is referring to a bib file for >> references. >> The bib file is in the inst/ directory (so I have used >> ../inst/REFERENCES.bib) to point to it. I don't get any warnings on my >> Linux computer when running check and BiocCheck. But when I submit the >> package it builds on Mac OS with no errors but on Linux it gives the error >> >> Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = >> vI[[i]]) : >> there is no package called bibtex >> >> Is this related to my referencing to the bib file? How could I solve this >> issue. I appreciate your help. >> >> Thanks! >> >> On Mon, Jan 29, 2018 at 11:49 AM, Diego Morais <arthur.v...@gmail.com> >> wrote: >> >> > Hello, Armen. >> > >> > Your vignettes should be located in <packagename> / vignettes. The >> > vignette will be built automatically later. >> > >> > 2018-01-29 16:41 GMT-03:00 Armen Abnousi <a.abno...@gmail.com>: >> > >> >> Hi, >> >> >> >> I'm trying to submit my first package. but I'm confused about the >> location >> >> of the vignettes in my submitted package. It seems like BiocCheck is >> >> expecting the vignettes to go in <packagename>/vignettes directory but >> R >> >> 3.2+ expects them to go in <packagename>/inst/doc directory. Wherever I >> >> put >> >> them, one of the checks complains about their location. Can't put them >> in >> >> both directories either. >> >> >> >> Thanks, >> >> Armen >> >> >> >> [[alternative HTML version deleted]] >> >> >> >> _______________________________________________ >> >> Bioc-devel@r-project.org mailing list >> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> >> > >> > >> > >> > -- >> > Atenciosamente, >> > Diego Arthur de Azevedo Morais >> > >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
