Hi Lori and Morgan, I am taking the "Maintain a Bioconductor-only repository tutorial". I'm done with "Push your local commits to the *Bioconductor* repository" so far. So what next I should do to make my new package available to the user community? I guess I need to do the next step "Merge changes to the current release branch", but I don't know my current release branch. Could you all help me out?
Thank you! Best wishes, Tingting On Thu, Jan 25, 2018 at 9:58 AM, Shepherd, Lori < lori.sheph...@roswellpark.org> wrote: > Sorry for the delay. Please try again. We have just processed the keys > again and it should be accessible. If you continue to have issues please > reply all so that it stays on the devel mailing list thread and other > members of the team can also assist. > > > Cheers > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Cancer Institute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Zhai, Tingting <tingting.z...@uky.edu> > *Sent:* Thursday, January 25, 2018 9:49:47 AM > *To:* Shepherd, Lori > *Subject:* Re: [Bioc-devel] NanoStringDiff package update > > Hi Lori, > You are so helpful! I really appreciate it! > I submitted the form you mentioned above two days ago (Jan. 23). But when > I run "git clone g...@git.bioconductor.org:packages/NanoStringDiff.git", I > still get the error that "Permission denied (publickey). > fatal: Could not read from remote repository." Does it mean that my key > has not been added to your system? > > Thank you again for your help. > > > Best wishes, > Tingting > > > > > On Thu, Jan 25, 2018 at 7:13 AM, Shepherd, Lori < > lori.sheph...@roswellpark.org> wrote: > > Bioconductor has switched from svn to git, and was announced back in > August 2017, so you are correct that you are no longer able to use svn to > upload changes to the new location for the Bioconductor repository > > > git.bioconductor.org > > > You don't have to use github to maintain your package locally (we do > recommend it but not necessary) but we do require git for maintaining the > Bioconductor canonical location. There are lots of scenarios and useful > FAQ section on the Bioconductor website > > > http://bioconductor.org/developers/how-to/git/ > > > Create a new GitHub repository tutorial - will take you through how to > convert an existing directory onto github and how to maintain the two > locations (local github and bioconductor git location) > > > Maintain a Bioconductor-only repository tutorial - will take you through > how to link to the Bioconductor git.bioconductor.org repository without > creating a github. > > > There are many tutorials with how to push changes and how to pull from the > Bioconductor repo (after a release happens this is necessary) and how to > trouble shoot common issues. > > > The first step will be to submit an id and ssh-key to the following form > to gain access to the package > > > https://docs.google.com/forms/d/1CCwUhjtG82rnmcTWYqY43WcmBx5 > YyQm5UD4pcs1dhEs/viewform?edit_requested=true > > > You will need to enter your email - because you had an svn account your > svn.id - and a ssh public key - > > > Cheers, > > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Cancer Institute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Zhai, > Tingting <tingting.z...@uky.edu> > *Sent:* Wednesday, January 24, 2018 2:17:17 PM > *To:* bioc-devel@r-project.org > *Subject:* [Bioc-devel] NanoStringDiff package update > > I’m one of the maintainers of NanoStringDiff package on Bioconductor. Now I > want to update this package and add some useful functions. I’m using SVN, > but when committing, it gives me this error: The new canonical location for > Bioconductor software and > > data experiment packages is git.bioconductor.org > > > The recommended way to maintain your Bioconductor software > > or data experiment package is to use GitHub. > > > > Does this mean I’m not able to use SVN to maintain my package any more? I’m > not familiar with github. > > > Thank you very much for any help in advance. > > > Best wishes, > > Tingting > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > Bioc-devel Info Page - ETH Zurich > <https://stat.ethz.ch/mailman/listinfo/bioc-devel> > stat.ethz.ch > Your email address: Your name (optional): You may enter a privacy password > below. 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