1) It's supposed to be deprecated -- I'm not 100% sure why it's still in release :-/ but will look into that 2) the FDb.InfiniumMethylation.hg19 package and (eventually-forthcoming-when-I-get-around-to-it) FDb.InfiniumMethylation.hg38 package are meant as its successor[s], hence the error message:
error: 'fun' is defunct. Use 'FDb.InfiniumMethylation.hg19' instead. Use 'FDb.InfiniumMethylation.hg18' instead. Use 'mapToGenome() function in minfi or methylumi' instead. 3) This question is better asked on the Bioconductor support website, https://support.bioconductor.org/, so that it comes up in Google searches, like so: https://support.bioconductor.org/p/73637/ Best, --t On Thu, Dec 7, 2017 at 10:48 AM, Maryam Hosseini Asanjan <hmar...@bgsu.edu> wrote: > Hi, > > > I am trying to install the 'IlluminaHumanMethylation450k.db' package the > way it is described at the bioconductor website (https://bioconductor.org/ > packages/release/data/annotation/html/IlluminaHumanMethylation450k.db.html) > but it does not work. > > I read some other websites and some mention that the package is not > working anymore. Is that true? If not, Is there any other way to install > the package? > > > Thanks, > > Maryam > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
