Hi,
I hope I am writing this to the right list.
I am currently trying to author a vignette for a package, we will be submitting
to Bioconductor. The PDF vignette creation fails inside a code block which I
cannot explain. I have attached a small example that contains the same code
block (the one labelled producesError) than my vignette and at least on my
machine it reproduces the error.
The process can create the .tex file, but fails in converting the .tex file to
a pdf. The error message in RStudio is:
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015) (preloaded
format=pdflatex)
restricted \write18 enabled.
entering extended mode
Latexmk: Errors, so I did not complete making targets
Collected error summary (may duplicate other messages):
pdflatex: Command for 'pdflatex' gave return code 256
Latexmk: Use the -f option to force complete processing,
unless error was exceeding maximum runs of latex/pdflatex.
The log file contains the following error:
! Undefined control sequence.
<argument> ...{"MALE"}\NormalTok {] }\OperatorTok
{==}\StringTok { }\DecValT...
l.137 ...=}\StringTok{ }\DecValTok{1}\NormalTok{)}
This points to a problem inside the code block with the which statement, but it
is unclear to me how the which statement can be a problem?
It would be really appreciated if you could help me.
Cheers,
Stefan
My session info is:
R version 3.4.1 (2017-06-30)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.6
Matrix products: default
BLAS:
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK:
/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib
locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] Numero_0.99.0
loaded via a namespace (and not attached):
[1] compiler_3.4.1 backports_1.1.1 BiocStyle_2.4.1 magrittr_1.5
rprojroot_1.2
[6] htmltools_0.3.6 tools_3.4.1 yaml_2.1.14 Rcpp_0.12.13
stringi_1.1.5
[11] rmarkdown_1.6 knitr_1.17 stringr_1.2.0 digest_0.6.12
evaluate_0.10.1?
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