Dear Lori, Thanks a lot for the clarification. I will incorporate os checks in my unit tests and examples.
Thanks, Anna On 2 October 2017 at 12:30, Shepherd, Lori <lori.sheph...@roswellpark.org> wrote: > You can still submit to bioconductor despite this limitation. You could > also do a os check in the examples and tests that fail on windows and make > a comment that this is the case. If the program is not meant to run in > windows there is options to handle that as well and the review assigned to > you can assist you with this. If you feel the package is otherwise ready > to submit to Bioconductor for review I would proceed. > > > https://github.com/Bioconductor/Contributions > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Cancer Institute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Anna > Gogleva <gogleva....@gmail.com> > *Sent:* Monday, October 2, 2017 5:36:57 AM > *To:* bioc-devel@r-project.org > *Subject:* [Bioc-devel] external dependencies > > Dear Bioconductor Team, > > I have written a package and was planning to submit it to Bioconductor one > day. The package provides a set of wrapper functions around several > existing command line tools to construct scalable and reproducible > pipelines for secretome prediction. > > The package requires several external system dependencies to be installed > in order to work (listed in the SystemRequirements filed). I have a > top-level README describing in detail how to install the required > dependencies and a shell script to automate this process. The thing is, > some of the external dependencies were not designed to work on Windows - > causing certain unit tests and examples to fail during the automatic R CMD > check on Windows. > > I have run R CMD check on Mac and Linux and the package passes without > errors, warnings or notes. It also satisfies the remaining requirements > from the recommended package checklist. > > What would be the best way to proceed? Would it be still ok to submit the > package though it is not fully functional on Windows due to unavailability > of certain external dependencies? > > Thank you for your advice, > > Anna Gogleva > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
