Dear R/Bioconductor users, Just to inform the list that we recently released a new R/Bioc package for microbiome analysis, in particular to support the analysis of 16S OTU tables (from small targeted to large-scale population cohorts). The Bioconductor page: https://www.bioconductor.org/packages/devel/bioc/html/ microbiome.html
In addition to the bioinformatics tools, the package includes example data sets. The largest example data set is a collection of taxonomic profiles of 130 genus-level groups across 1006 western adults. An online tutorial with reproducible examples is available at http://microbiome.github.io/ microbiome/ The microbiome R package is based on the same data structures and expands the capabilities provided by the independent phyloseq package. Issues, pull requests, and feedback welcome. best regards Leo Lahti, Sudarshan Shetty, et al. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
