Once you submit the key you should have access. Please provide the calls you
are using and also the results of git remote -v
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Carlos Ruiz <carlos.r...@isglobal.org>
Sent: Tuesday, September 12, 2017 12:08:15 PM
To: Shepherd, Lori
Subject: Re: Bioconductor failing package MEAL
Hi,
I am experiencing some problems with the git system. I think that i have not
properly configured the ssh keys. I have filled again the form with the ssh
keys (user name: c.ruiz-arenas). Once you introduced my keys in the system,
should I do anything else to update the repo? Should I change the configuration
on git?
Thank you,
Carlos Ruiz
El 12/09/2017 a las 17:37, Shepherd, Lori escribió:
Please update. We have temporarily added your package to the deprecation list
as we did not hear from you and there were no updates. If you package builds
and checks cleanly we will remove it from the list of deprecated packages.
Please also be advised we have transitioned to git. There are some useful
information here:
http://bioconductor.org/developers/how-to/git/
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Carlos Ruiz <carlos.r...@isglobal.org>
Sent: Tuesday, September 12, 2017 11:28:33 AM
To: Shepherd, Lori
Subject: Re: Bioconductor failing package MEAL
Hi Lori,
I apologize for not replying you sooner but I have just finished my holidays
today. I have finished the vignettes today and I only need to update the tests
to have a fully working version again. Therefore, I expect to push my changes
during this week.
MEAL contains wrappers to other methods to ease performing methylation and gene
expression analyses. I previously created a data package to show MEAL
functionalities and I used it in my vignettes. We have created a new data
package (BRGEdata) in our group that could be used by different packages. My
colleague uploaded it in the submission of omicRexpsome but he is experiencing
some problems that are trying to solve with Martin.
Until this package is not working, the new version of MEAL will fail to build
the vignettes. Should I wait until BRGEdata issue is solved or can I update the
package without including the vignettes?
Bests,
2017-09-01 14:21 GMT+02:00 Shepherd, Lori <lori.sheph...@roswellpark.org>:
Dear MEAL maintainer,
The MEAL package continues to fail to pass 'R CMD build' on all platforms in
the devel version of Bioconductor (i.e. BioC 3.6):
http://bioconductor.org/checkResults/3.6/bioc-LATEST/MEAL/malbec1-buildsrc.html
If no action is taken we will begin the deprecation process for your package.
Thank you for your time and effort.
I understand that you reached out indicating there were big changes to MEAL; As
it is getting closer to our next release (end Oct), these changes should be
pushed as soon as possible to allow for others who depend on your package to
update there packages accordingly
Thanks for your contribution to Bioconductor.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Carlos Ruiz <carlos.r...@isglobal.org>
Sent: Friday, July 21, 2017 9:24:41 AM
To: Shepherd, Lori
Subject: Re: Bioconductor failing package MEAL
Hi Lori,
I apology for not answering to you before. I am doing big changes to MEAL
package. Currently, I have a working version but I have to redo the vignette
and the tests. Once I finish them, I will make a new bump to my package.
Bests,
Carlos Ruiz
2017-07-21 15:17 GMT+02:00 Shepherd, Lori <lori.sheph...@roswellpark.org>:
Dear MEAL maintainer,
The MEAL package continues to fail to pass 'R CMD build' on all platforms in
the devel version of Bioconductor (i.e. BioC 3.6):
http://bioconductor.org/checkResults/3.6/bioc-LATEST/MEAL/malbec1-buildsrc.html
Don't hesitate to ask questions on the support site if you are having trouble.
If no action is taken over the next several weeks we will begin the deprecation
process for your package. Thank you for your time and effort.
Thanks for your contribution to Bioconductor.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Shepherd, Lori
Sent: Wednesday, July 12, 2017 7:12:35 AM
To: carles.hernan...@isglobal.org; juanr.gonza...@isglobal.org;
carlos.r...@isglobal.org
Subject: Bioconductor failing package MEAL
Dear MEAL maintainer,
I'd like to bring to your attention that the MAIT package is failing to pass 'R
CMD build' on all platforms in the devel version of Bioconductor (i.e. BioC
3.6):
http://bioconductor.org/checkResults/3.6/bioc-LATEST/MEAL/malbec1-buildsrc.html
Would you mind taking a look at this? Don't hesitate to ask on the bioc-devel
mailing list if you have any question or need help.
If no action is taken over the next several weeks we will begin the deprecation
process for your package. Thank you for your time and effort.
Thanks for your contribution to Bioconductor.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
This email message may contain legally privileged and/or confidential
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--
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Barcelona Biomedical Research Park (PRBB) (office 183.01 C)
Doctor Aiguader, 88
08003 Barcelona, Spain
Tel. +34 93 214 73 09
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