Hi, I general LCMSMS generate mass/charge data of Amino Acid or peptides. The goal in to identify which protein belong the peptides. The Software used with LCMSMS can match the peptides to Uniprot database , and ranks putative proteins by scores. Could the tell us what is the interest of org.Hs.uniprot.db versus default UniprotKB? Thanks, Karim
On Wed, Sep 13, 2017 at 11:19 AM, Vincent Carey <st...@channing.harvard.edu> wrote: > can you say a little more about what resource will be tapped and what it > will look like? you can > already use uniprot identifiers as keys into org.Hs.eg.db > > On Tue, Sep 12, 2017 at 9:05 AM, Aditya Bhagwat < > adb2...@qatar-med.cornell.edu> wrote: > > > Hey guys, > > > > I love the org.Hs.eg.db package (and similar others for other organisms). > > > > I work a lot with LCMSMS proteomics data, and I have always missed a > > similar org.Hs.uniprot.db package, so I am thinking of creating that (and > > then sharing it on BioC, to benefit fellow proteomics R users). > > > > Would you agree that this is of general interest? (Or does this in some > > form already exist and have I overlooked it?) > > > > Thanks for your feedback! > > > > Cheers, > > > > Aditya > > > > > > > > Disclaimer: This email and its attachments may be confidential and are > > intended solely for the use of the individual to whom it is addressed. If > > you are not the intended recipient, any reading, printing, storage, > > disclosure, copying or any other action taken in respect of this e-mail > is > > prohibited and may be unlawful. If you are not the intended recipient, > > please notify the sender immediately by using the reply function and then > > permanently delete what you have received.. > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
