On 08/30/2017 06:20 PM, Tiago Chedraoui Silva wrote:
Hello,
I had the same problem with the ELMER.data package (Experiment package).
*> tiagochst@epigenomeFMRP3:~/ELMER.data$ git push upstream master*
FATAL: W any packages/ELMER.data t.silva DENIED by fallthru
(or you mis-spelled the reponame)
fatal: Could not read from remote repository.
*> origin https://github.com/tiagochst/ELMER.data.git (push)*
upstream g...@git.bioconductor.org:packages/ELMER.data.git (fetch)
upstream g...@git.bioconductor.org:packages/ELMER.data.git (push)
Thanks, permissions were not correctly transfered for experiment data
packages with a '.' in their name.
This should be corrected now.
Martin
Best regards,
Tiago Chedraoui Silva
On Fri, Aug 25, 2017 at 10:48 AM, Matt Richards
<matt.richa...@systemsbiology.org
<mailto:matt.richa...@systemsbiology.org>> wrote:
Thanks Martin, I retried the push to upstream and it works just fine
now.
Thanks
Matt
On Fri, Aug 25, 2017 at 10:27 AM, Martin Morgan <
martin.mor...@roswellpark.org
<mailto:martin.mor...@roswellpark.org>> wrote:
> On 08/25/2017 01:17 PM, Matt Richards wrote:
>
>> Hi all,
>>
>> I maintain the "trena" package and I'm attempting to sync the
changes from
>> my in-house Github repo with the Bioconductor version. I
submitted my ssh
>> keys last week, so essentially I'm following these instructions:
>>
>> https://www.bioconductor.org/developers/how-to/git/sync-
<https://www.bioconductor.org/developers/how-to/git/sync->
>> existing-repositories/
>>
>> I've seemingly made it from #1-8 successfully, but in trying to
push to
>> the
>> upstream branch, I get an error:
>>
>> ------
>>
>> buoy:trena mrichard$ git push upstream master
>>
>> FATAL: W any packages/trena m.richards DENIED by fallthru
>>
>> (or you mis-spelled the reponame)
>>
>> fatal: Could not read from remote repository.
>>
>> Please make sure you have the correct access rights
>>
>> and the repository exists.
>>
>> ------
>> I checked on my remotes via git config as well:
>>
>> ------
>>
>>
remote.bioc.url=https://hedgehog.fhcrc.org/bioconductor/trunk/madman/
<https://hedgehog.fhcrc.org/bioconductor/trunk/madman/>
>> Rpacks/TReNA
>>
>> remote.bioc.fetch=+refs/heads/*:refs/remotes/bioc/*
>>
>> remote.upstream.url=g...@git.bioconductor.org:packages/trena.git
>>
>> remote.upstream.fetch=+refs/heads/*:refs/remotes/upstream/*
>>
>> ------
>>
>> Any idea on how I can navigate this error? Ultimately, we've
made a lot of
>> changes to the repo (including changing the capitalization of
the package
>> from "TReNA" to "trena") and I definitely want to get in those
updates for
>> the next release.
>>
>
> This was an error on our side and should be fixed now.
>
> We maintain a 'manifest' of packages in each Bioconductor
release. The
> package name was changed in the manifest and in the svn
repository, but not
> in the svn permissions file. When we made git permissions, the svn
> permissions weren't copied over because the svn path wasn't in
the manifest.
>
> Sorry for the inconvenience.
>
> Martin
>
>
>> Thanks
>> Matt
>>
>>
>
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