Le Sat, Jun 10, 2017 at 03:11:37PM -0400, Zach Skidmore a écrit : > > genome <- findCorrectGenome() > library(genome, character.only=T) > refBases <- getSeq(genome, Granges) > detach(genome, unload = T, character.only = T) > > It feels wrong to have library calls like this within the package though. As > an alternative I suppose I could put in the suggests field all BSgenome > packages, but I don't really want to do that either. does any one have a > better idea? I think the ideal solution would be to just do something like > this: > > refBases <- getSeq(geome::genome, Granges)
Hello Zach, recently, I did something like this: requireNamespace(genome) genome <- getExportedValue(genome, genome) I am not sure if it is the best solution, but for the moment, it works. Have a nice week-end, Charles -- Charles Plessy, Ph.D. – RIKEN Center for Life Science Technologies Division of Genomic Technologies – Genomics Miniaturization Technology Unit 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045 Japan ■■□―――――――――― http://population-transcriptomics.org ――――――――――□■■ _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
