> On 3 May 2017, at 19:51, Martin Morgan <martin.mor...@roswellpark.org> wrote: > > On 05/03/2017 01:10 PM, Leonardo Collado Torres wrote: >> Hi, >> >> I don't think that any of the Bioconductor-mirror repos have been >> updated to match the current bioc-devel branch. For example, look at >> https://github.com/Bioconductor-mirror/aCGH/blob/master/DESCRIPTION#L4 >> which is one of the first packages by alphabetical order. My guess is >> that they are working on the svn to git transition plan described at >> https://stat.ethz.ch/pipermail/bioc-devel/2017-March/010691.html. > > That's not correct, the repositories should be (in general) up to date. I > believe Johannes' package is current (sorry, by the time I got to it it had > healed itself and I didn't respond to the list). >
No prob. I've made an update to the package and after committing the change to the Bioc svn ensembldb was synced successfully. > aCGH actually had a RELEASE_3_5 branch; I'll investigate why aCGH and at > least some other packages have not been fully updated after the branch. > > Martin > > >> >> Best, >> Leo >> >> On Thu, Apr 27, 2017 at 6:52 AM, Rainer Johannes >> <johannes.rai...@eurac.edu> wrote: >>> Hi, >>> >>> the github mirror for ensembldb seems to be out of sync with the BioC svn, >>> i.e. the DESCRIPTION in >>> https://github.com/Bioconductor-mirror/ensembldb/blob/master/DESCRIPTION is >>> still at version 1.99.14 while in the svn it's already 2.1.0. >>> >>> First I thought the sync is not yet finished, but the release-3.5 was >>> already created on the github mirror, so I guess sync must have been stuck >>> somewhere. >>> >>> >>> >>> >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> Bioc-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
